Merge pull request #1 from github/main

Sync with the upstream

Author: Sim4n6

.github/actions/cache-query-compilation/action.yml

@@ -23,20 +23,19 @@ runs:
       run: |
         MERGE_BASE=$(git cat-file commit $GITHUB_SHA | grep '^parent ' | head -1 | cut -f 2 -d " ")
         echo "merge_base=$MERGE_BASE" >> $GITHUB_ENV
-    - name: Restore read-only cache (PR)
+    - name: Restore cache (PR)
       if: ${{ github.event_name == 'pull_request' }}
-      uses: erik-krogh/actions-cache@a88d0603fe5fb5606db9f002dfcadeb32b5f84c6
+      uses: actions/cache/restore@v3
       with:
         path: '**/.cache'
-        read-only: true
         key: codeql-compile-${{ inputs.key }}-pr-${{ github.sha }}
         restore-keys: |
           codeql-compile-${{ inputs.key }}-${{ github.base_ref }}-${{ env.merge_base }}
           codeql-compile-${{ inputs.key }}-${{ github.base_ref }}-
           codeql-compile-${{ inputs.key }}-main-
-    - name: Fill cache (push)
+    - name: Fill cache (only branch push)
       if: ${{ github.event_name != 'pull_request' }}
-      uses: erik-krogh/actions-cache@a88d0603fe5fb5606db9f002dfcadeb32b5f84c6
+      uses: actions/cache@v3
       with:
         path: '**/.cache'
         key: codeql-compile-${{ inputs.key }}-${{ github.ref_name }}-${{ github.sha }} # just fill on main

.github/actions/fetch-codeql/action.yml

@@ -19,4 +19,6 @@ runs:
         gh extension install github/gh-codeql
         gh codeql set-channel "$CHANNEL"
         gh codeql version
+        printf "CODEQL_FETCHED_CODEQL_PATH=" >> "${GITHUB_ENV}"
+        gh codeql version --format=json | jq -r .unpackedLocation >> "${GITHUB_ENV}"
         gh codeql version --format=json | jq -r .unpackedLocation >> "${GITHUB_PATH}"

.github/actions/find-latest-bundle/action.yml

@@ -0,0 +1,26 @@
+name: Find Latest CodeQL Bundle
+description: Finds the URL of the latest released version of the CodeQL bundle.
+outputs:
+  url:
+    description: The download URL of the latest CodeQL bundle release
+    value: ${{ steps.find-latest.outputs.url }}
+runs:
+  using: composite
+  steps:
+    - name: Find Latest Release
+      id: find-latest
+      shell: pwsh
+      run: |
+        $Latest = gh release list --repo github/codeql-action --exclude-drafts --limit 1000 |
+          ForEach-Object { $C = $_ -split "`t"; return @{ type = $C[1]; tag = $C[2]; } } |
+          Where-Object { $_.type -eq 'Latest' }
+
+        $Tag = $Latest.tag
+        if ($Tag -eq '') {
+          throw 'Failed to find latest bundle release.'
+        }
+
+        Write-Output "Latest bundle tag is '${Tag}'."
+        "url=https://github.com/github/codeql-action/releases/download/${Tag}/codeql-bundle-linux64.tar.gz" >> $env:GITHUB_OUTPUT
+      env:
+        GITHUB_TOKEN: ${{ github.token }}

.github/actions/os-version/action.yml

@@ -0,0 +1,32 @@
+name: OS Version
+description: Get OS version.
+
+outputs:
+  version:
+    description: "OS version"
+    value: ${{ steps.version.outputs.version }}
+
+runs:
+  using: composite
+  steps:
+    - if: runner.os == 'Linux'
+      shell: bash
+      run: |
+        . /etc/os-release
+        echo "VERSION=${NAME} ${VERSION}" >> $GITHUB_ENV
+    - if: runner.os == 'Windows'
+      shell: powershell
+      run: |
+        $objects = systeminfo.exe /FO CSV | ConvertFrom-Csv
+        "VERSION=$($objects.'OS Name') $($objects.'OS Version')" >> $env:GITHUB_ENV
+    - if: runner.os == 'macOS'
+      shell: bash
+      run: |
+        echo "VERSION=$(sw_vers -productName) $(sw_vers -productVersion)" >> $GITHUB_ENV
+    - name: Emit OS version
+      id: version
+      shell: bash
+      run: |
+        echo "$VERSION"
+        echo "version=${VERSION}" >> $GITHUB_OUTPUT
+

.github/dependabot.yml

@@ -1,19 +1,7 @@
 version: 2
 updates:
   - package-ecosystem: "cargo"
-    directory: "ruby/node-types"
-    schedule:
-      interval: "daily"
-  - package-ecosystem: "cargo"
-    directory: "ruby/generator"
-    schedule:
-      interval: "daily"
-  - package-ecosystem: "cargo"
-    directory: "ruby/extractor"
-    schedule:
-      interval: "daily"
-  - package-ecosystem: "cargo"
-    directory: "ruby/autobuilder"
+    directory: "ruby"
     schedule:
       interval: "daily"
 

.github/workflows/atm-check-query-suite.yml

@@ -13,7 +13,7 @@ on:
 
 jobs:
   atm-check-query-suite:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-latest-xl
 
     steps:
       - uses: actions/checkout@v3
@@ -23,6 +23,12 @@ jobs:
         with:
           channel: release
 
+      - name: Cache compilation cache
+        id: query-cache
+        uses: ./.github/actions/cache-query-compilation
+        with: 
+          key: atm-suite
+
       - name: Install ATM model
         run: |
           set -exu
@@ -50,10 +56,13 @@ jobs:
           echo "SARIF_PATH=${SARIF_PATH}" >> "${GITHUB_ENV}"
 
           codeql database analyze \
+            --threads=0 \
+            --ram 50000 \
             --format sarif-latest \
             --output "${SARIF_PATH}" \
             --sarif-group-rules-by-pack \
             -vv \
+            --compilation-cache "${{ steps.query-cache.outputs.cache-dir }}" \
             -- \
             "${DB_PATH}" \
             "${QUERY_PACK}/${QUERY_SUITE}"

.github/workflows/check-change-note.yml

@@ -26,3 +26,9 @@ jobs:
         run: |
           gh api 'repos/${{github.repository}}/pulls/${{github.event.number}}/files' --paginate --jq 'any(.[].filename ; test("/change-notes/.*[.]md$"))' |
           grep true -c
+      - name: Fail if the change note filename doesn't match the expected format. The file name must be of the form 'YYYY-MM-DD.md' or 'YYYY-MM-DD-{title}.md', where '{title}' is arbitrary text.
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          gh api 'repos/${{github.repository}}/pulls/${{github.event.number}}/files' --paginate --jq '[.[].filename | select(test("/change-notes/.*[.]md$"))] | all(test("/change-notes/[0-9]{4}-[0-9]{2}-[0-9]{2}.*[.]md$"))' |
+          grep true -c

.github/workflows/check-query-ids.yml

@@ -0,0 +1,21 @@
+name: Check query IDs
+
+on:
+  pull_request:
+    paths:
+      - "**/src/**/*.ql"
+      - misc/scripts/check-query-ids.py
+      - .github/workflows/check-query-ids.yml
+    branches:
+      - main
+      - "rc/*"
+  workflow_dispatch:
+
+jobs:
+  check:
+    name: Check query IDs
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - name: Check for duplicate query IDs
+        run: python3 misc/scripts/check-query-ids.py

.github/workflows/close-stale.yml

@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/stale@v6
+    - uses: actions/stale@v7
       with:
         repo-token: ${{ secrets.GITHUB_TOKEN }}
         stale-issue-message: 'This issue is stale because it has been open 14 days with no activity. Comment or remove the `Stale` label in order to avoid having this issue closed in 7 days.'

.github/workflows/mad_modelDiff.yml

@@ -11,7 +11,7 @@ on:
     branches:
       - main
     paths:
-      - "java/ql/src/utils/model-generator/**/*.*"
+      - "java/ql/src/utils/modelgenerator/**/*.*"
       - ".github/workflows/mad_modelDiff.yml"
 
 permissions:
@@ -40,12 +40,12 @@ jobs:
       - name: Download database
         env:
           SLUG: ${{ matrix.slug }}
+          GH_TOKEN: ${{ github.token }}
         run: |
           set -x
           mkdir lib-dbs
           SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          projectId=`curl -s https://lgtm.com/api/v1.0/projects/g/${SLUG} | jq .id`
-          curl -L "https://lgtm.com/api/v1.0/snapshots/$projectId/java" -o "$SHORTNAME.zip"
+          gh api -H "Accept: application/zip" "/repos/${SLUG}/code-scanning/codeql/databases/java" > "$SHORTNAME.zip"
           unzip -q -d "${SHORTNAME}-db" "${SHORTNAME}.zip"
           mkdir "lib-dbs/$SHORTNAME/"
           mv "${SHORTNAME}-db/"$(ls -1 "${SHORTNAME}"-db)/* "lib-dbs/${SHORTNAME}/"
@@ -61,8 +61,8 @@ jobs:
             DATABASE=$2
             cd codeql-$QL_VARIANT
             SHORTNAME=`basename $DATABASE`
-            python java/ql/src/utils/model-generator/GenerateFlowModel.py --with-summaries --with-sinks $DATABASE $MODELS/${SHORTNAME}.qll
-            mv $MODELS/${SHORTNAME}.qll $MODELS/${SHORTNAME}Generated_${QL_VARIANT}.qll
+            python java/ql/src/utils/modelgenerator/GenerateFlowModel.py --with-summaries --with-sinks $DATABASE ${SHORTNAME}.temp.model.yml
+            mv java/ql/lib/ext/generated/${SHORTNAME}.temp.model.yml $MODELS/${SHORTNAME}Generated_${QL_VARIANT}.model.yml
             cd ..
           }
 
@@ -85,19 +85,21 @@ jobs:
           set -x
           MODELS=`pwd`/tmp-models
           ls -1 tmp-models/
-          for m in $MODELS/*_main.qll ; do
+          for m in $MODELS/*_main.model.yml ; do
             t="${m/main/"pr"}"
             basename=`basename $m`
-            name="diff_${basename/_main.qll/""}"
+            name="diff_${basename/_main.model.yml/""}"
             (diff -w -u $m $t | diff2html -i stdin -F $MODELS/$name.html) || true
           done
       - uses: actions/upload-artifact@v3
         with:
           name: models
-          path: tmp-models/*.qll
+          path: tmp-models/*.model.yml
           retention-days: 20
       - uses: actions/upload-artifact@v3
         with:
           name: diffs
           path: tmp-models/*.html
+          # An html file is only produced if the generated models differ.
+          if-no-files-found: ignore
           retention-days: 20

.github/workflows/mad_regenerate-models.yml

@@ -50,10 +50,10 @@ jobs:
           SLUG: ${{ matrix.slug }}
         run: |
           SHORTNAME=${SLUG//[^a-zA-Z0-9_]/}
-          java/ql/src/utils/model-generator/RegenerateModels.py "${SLUG}" dbs/${SHORTNAME}
+          java/ql/src/utils/modelgenerator/RegenerateModels.py "${SLUG}" dbs/${SHORTNAME}
       - name: Stage changes
         run: |
-          find java -name "*.qll" -print0 | xargs -0 git add
+          find java -name "*.model.yml" -print0 | xargs -0 git add
           git status
           git diff --cached > models.patch
       - uses: actions/upload-artifact@v3

.github/workflows/ql-for-ql-build.yml

@@ -22,24 +22,30 @@ jobs:
     steps:
       ### Build the queries ###
       - uses: actions/checkout@v3
+      - name: Find latest bundle
+        id: find-latest-bundle
+        uses: ./.github/actions/find-latest-bundle
       - name: Find codeql
         id: find-codeql
-        uses: github/codeql-action/init@77a8d2d10c0b403a8b4aadbd223dc489ecd22683
+        uses: github/codeql-action/init@45955cb1830b640e2c1603ad72ad542a49d47b96
         with:
           languages: javascript # does not matter
+          tools: ${{ steps.find-latest-bundle.outputs.url }}
       - name: Get CodeQL version
         id: get-codeql-version
         run: |
           echo "version=$("${CODEQL}" --version | head -n 1 | rev | cut -d " " -f 1 | rev)" >> $GITHUB_OUTPUT
         shell: bash
         env:
           CODEQL: ${{ steps.find-codeql.outputs.codeql-path }}
+      - uses: ./.github/actions/os-version
+        id: os_version
       - name: Cache entire pack
         id: cache-pack
         uses: actions/cache@v3
         with:
           path: ${{ runner.temp }}/pack
-          key: ${{ runner.os }}-pack-${{ hashFiles('ql/**/Cargo.lock') }}-${{ hashFiles('ql/**/*.rs') }}-${{ hashFiles('ql/**/*.ql*') }}-${{ hashFiles('ql/**/qlpack.yml') }}-${{ hashFiles('ql/ql/src/ql.dbscheme*') }}-${{ steps.get-codeql-version.outputs.version }}--${{ hashFiles('.github/workflows/ql-for-ql-build.yml') }}
+          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-pack-${{ hashFiles('ql/**/Cargo.lock') }}-${{ hashFiles('ql/**/*.rs') }}-${{ hashFiles('ql/**/*.ql*') }}-${{ hashFiles('ql/**/qlpack.yml') }}-${{ hashFiles('ql/ql/src/ql.dbscheme*') }}-${{ steps.get-codeql-version.outputs.version }}--${{ hashFiles('.github/workflows/ql-for-ql-build.yml') }}
       - name: Cache queries
         if: steps.cache-pack.outputs.cache-hit != 'true'
         id: cache-queries
@@ -73,7 +79,7 @@ jobs:
             ql/target/release/ql-autobuilder.exe
             ql/target/release/ql-extractor
             ql/target/release/ql-extractor.exe
-          key: ${{ runner.os }}-extractor-${{ hashFiles('ql/**/Cargo.lock') }}-${{ hashFiles('ql/**/*.rs') }}
+          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-extractor-${{ hashFiles('ql/**/Cargo.lock') }}-${{ hashFiles('ql/**/*.rs') }}
       - name: Cache cargo
         if: steps.cache-extractor.outputs.cache-hit != 'true' && steps.cache-pack.outputs.cache-hit != 'true'
         uses: actions/cache@v3
@@ -82,7 +88,7 @@ jobs:
             ~/.cargo/registry
             ~/.cargo/git
             ql/target
-          key: ${{ runner.os }}-rust-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
+          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-rust-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
       - name: Check formatting
         if: steps.cache-extractor.outputs.cache-hit != 'true' && steps.cache-pack.outputs.cache-hit != 'true'
         run: cd ql; cargo fmt --all -- --check
@@ -133,19 +139,20 @@ jobs:
         env:
           CONF: ./ql-for-ql-config.yml
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@77a8d2d10c0b403a8b4aadbd223dc489ecd22683
+        uses: github/codeql-action/init@45955cb1830b640e2c1603ad72ad542a49d47b96
         with:
           languages: ql
           db-location: ${{ runner.temp }}/db
           config-file: ./ql-for-ql-config.yml
-      - name: Move pack cache
+          tools: ${{ steps.find-latest-bundle.outputs.url }}
+      - name: Move pack queries
         run: |
-          cp -r ${PACK}/.cache ql/ql/src/.cache
+          cp -r ${PACK}/queries ql/ql/src
         env:
           PACK: ${{ runner.temp }}/pack
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@77a8d2d10c0b403a8b4aadbd223dc489ecd22683
+        uses: github/codeql-action/analyze@45955cb1830b640e2c1603ad72ad542a49d47b96
         with:
           category: "ql-for-ql"
       - name: Copy sarif file to CWD
@@ -167,4 +174,4 @@ jobs:
         with:
           name: ql-for-ql-langs
           path: split-sarif
-          retention-days: 1
+          retention-days: 1

.github/workflows/ql-for-ql-dataset_measure.yml

@@ -25,16 +25,18 @@ jobs:
 
       - name: Find codeql
         id: find-codeql
-        uses: github/codeql-action/init@77a8d2d10c0b403a8b4aadbd223dc489ecd22683
+        uses: github/codeql-action/init@45955cb1830b640e2c1603ad72ad542a49d47b96
         with:
           languages: javascript # does not matter
+      - uses: ./.github/actions/os-version
+        id: os_version
       - uses: actions/cache@v3
         with:
           path: |
             ~/.cargo/registry
             ~/.cargo/git
             ql/target
-          key: ${{ runner.os }}-qltest-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
+          key: ${{ runner.os }}-${{ steps.os_version.outputs.version }}-qltest-cargo-${{ hashFiles('ql/**/Cargo.lock') }}
       - name: Build Extractor
         run: cd ql; env "PATH=$PATH:`dirname ${CODEQL}`" ./scripts/create-extractor-pack.sh
         env: