Updated tcia_prostatex_prostate_mri_anatomy_model.ipynb

Fixed some dependency issues related to itkwidgets that were preventing the notebook from running.

Author: kirbyju

model_zoo/TCIA_PROSTATEx_Prostate_MRI_Anatomy_Model.ipynb

@@ -116,17 +116,21 @@
     "!python -c \"import cv2\" || pip install -q opencv-python-headless\n",
     "\n",
     "# These are the libraries used to read DICOM Seg objects.\n",
-    "!python -m pip install -q pydicom pydicom-seg\n",
-    "\n",
-    "# Install tcia_utils to download the datasets.\n",
-    "!python -m pip install --upgrade -q --no-deps tcia_utils\n",
+    "!python -m pip install -q \"pydicom<3\" pydicom-seg\n",
     "\n",
     "# Install the dependency manually to avoid installing opencv-python.\n",
-    "!python -m pip install -q plotly bs4 ipywidgets unidecode jsonschema\n",
+    "!python -m pip install -q plotly bs4 unidecode\n",
     "!python -m pip install -q --no-deps rt-utils\n",
     "\n",
+    "# Install tcia_utils to download the datasets.\n",
+    "!python -m pip install --upgrade -q --no-deps tcia_utils\n",
+    "\n",
     "# This is the installation required for itkWidgets.\n",
-    "!python -m pip install --upgrade --pre -q \"itkwidgets[all]==1.0a23\" imjoy_elfinder"
+    "!python -m pip install --upgrade --pre -q \"itkwidgets[all]\" imjoy_elfinder\n",
+    "\n",
+    "# TEMPORARY WORKAROUND TO RESOLVE: https://github.com/kirbyju/TCIA_Notebooks/issues/30\n",
+    "!python -m pip uninstall -y -q zarr ngff_zarr\n",
+    "!python -m pip install -q zarr ngff_zarr"
    ]
   },
   {