update specs

Author: oesteban

nipype/interfaces/afni/tests/test_auto_ABoverlap.py

@@ -24,13 +24,17 @@ def test_ABoverlap_inputs():
     ),
     no_automask=dict(argstr='-no_automask',
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     out_file=dict(argstr=' |& tee %s',
     position=-1,
     ),
     outputtype=dict(),
     quiet=dict(argstr='-quiet',
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     verb=dict(argstr='-verb',
     ),

nipype/interfaces/afni/tests/test_auto_AFNICommand.py

@@ -12,12 +12,16 @@ def test_AFNICommand_inputs():
     ignore_exception=dict(nohash=True,
     usedefault=True,
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     out_file=dict(argstr='-prefix %s',
     name_source=['in_file'],
     name_template='%s_afni',
     ),
     outputtype=dict(),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = AFNICommand.input_spec()

nipype/interfaces/afni/tests/test_auto_AFNICommandBase.py

@@ -12,7 +12,8 @@ def test_AFNICommandBase_inputs():
     ignore_exception=dict(nohash=True,
     usedefault=True,
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = AFNICommandBase.input_spec()

nipype/interfaces/afni/tests/test_auto_AFNIPythonCommand.py

@@ -12,12 +12,16 @@ def test_AFNIPythonCommand_inputs():
     ignore_exception=dict(nohash=True,
     usedefault=True,
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     out_file=dict(argstr='-prefix %s',
     name_source=['in_file'],
     name_template='%s_afni',
     ),
     outputtype=dict(),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = AFNIPythonCommand.input_spec()

nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py

@@ -22,6 +22,9 @@ def test_AFNItoNIFTI_inputs():
     newid=dict(argstr='-newid',
     xor=['oldid'],
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     oldid=dict(argstr='-oldid',
     xor=['newid'],
     ),
@@ -33,7 +36,8 @@ def test_AFNItoNIFTI_inputs():
     outputtype=dict(),
     pure=dict(argstr='-pure',
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = AFNItoNIFTI.input_spec()

nipype/interfaces/afni/tests/test_auto_AlignEpiAnatPy.py

@@ -37,7 +37,8 @@ def test_AlignEpiAnatPy_inputs():
     suffix=dict(argstr='-suffix %s',
     usedefault=True,
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     tshift=dict(argstr='-tshift %s',
     usedefault=True,

nipype/interfaces/afni/tests/test_auto_Allineate.py

@@ -67,6 +67,9 @@ def test_Allineate_inputs():
     ),
     nomask=dict(argstr='-nomask',
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     nwarp=dict(argstr='-nwarp %s',
     ),
     nwarp_fixdep=dict(argstr='-nwarp_fixdep%s',
@@ -101,7 +104,8 @@ def test_Allineate_inputs():
     ),
     source_mask=dict(argstr='-source_mask %s',
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     two_best=dict(argstr='-twobest %d',
     ),

nipype/interfaces/afni/tests/test_auto_AutoTLRC.py

@@ -22,7 +22,8 @@ def test_AutoTLRC_inputs():
     no_ss=dict(argstr='-no_ss',
     ),
     outputtype=dict(),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = AutoTLRC.input_spec()

nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py

@@ -27,14 +27,18 @@ def test_AutoTcorrelate_inputs():
     mask_source=dict(argstr='-mask_source %s',
     xor=['mask_only_targets'],
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     out_file=dict(argstr='-prefix %s',
     name_source='in_file',
     name_template='%s_similarity_matrix.1D',
     ),
     outputtype=dict(),
     polort=dict(argstr='-polort %d',
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = AutoTcorrelate.input_spec()

nipype/interfaces/afni/tests/test_auto_Autobox.py

@@ -18,14 +18,18 @@ def test_Autobox_inputs():
     ),
     no_clustering=dict(argstr='-noclust',
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     out_file=dict(argstr='-prefix %s',
     name_source='in_file',
     name_template='%s_autobox',
     ),
     outputtype=dict(),
     padding=dict(argstr='-npad %d',
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = Autobox.input_spec()

nipype/interfaces/afni/tests/test_auto_Automask.py

@@ -27,12 +27,16 @@ def test_Automask_inputs():
     mandatory=True,
     position=-1,
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     out_file=dict(argstr='-prefix %s',
     name_source='in_file',
     name_template='%s_mask',
     ),
     outputtype=dict(),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = Automask.input_spec()

nipype/interfaces/afni/tests/test_auto_Axialize.py

@@ -23,6 +23,9 @@ def test_Axialize_inputs():
     mandatory=True,
     position=-2,
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     orientation=dict(argstr='-orient %s',
     ),
     out_file=dict(argstr='-prefix %s',
@@ -33,7 +36,8 @@ def test_Axialize_inputs():
     sagittal=dict(argstr='-sagittal',
     xor=['coronal', 'axial'],
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     verb=dict(argstr='-verb',
     ),

nipype/interfaces/afni/tests/test_auto_Bandpass.py

@@ -44,6 +44,9 @@ def test_Bandpass_inputs():
     ),
     notrans=dict(argstr='-notrans',
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     orthogonalize_dset=dict(argstr='-dsort %s',
     ),
     orthogonalize_file=dict(argstr='-ort %s',
@@ -55,7 +58,8 @@ def test_Bandpass_inputs():
     position=1,
     ),
     outputtype=dict(),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     tr=dict(argstr='-dt %f',
     ),

nipype/interfaces/afni/tests/test_auto_BlurInMask.py

@@ -28,6 +28,9 @@ def test_BlurInMask_inputs():
     ),
     multimask=dict(argstr='-Mmask %s',
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     options=dict(argstr='%s',
     position=2,
     ),
@@ -39,7 +42,8 @@ def test_BlurInMask_inputs():
     outputtype=dict(),
     preserve=dict(argstr='-preserve',
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = BlurInMask.input_spec()

nipype/interfaces/afni/tests/test_auto_BlurToFWHM.py

@@ -25,12 +25,16 @@ def test_BlurToFWHM_inputs():
     ),
     mask=dict(argstr='-blurmaster %s',
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     out_file=dict(argstr='-prefix %s',
     name_source=['in_file'],
     name_template='%s_afni',
     ),
     outputtype=dict(),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = BlurToFWHM.input_spec()

nipype/interfaces/afni/tests/test_auto_BrickStat.py

@@ -32,7 +32,8 @@ def test_BrickStat_inputs():
     ),
     sum=dict(argstr='-sum',
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     var=dict(argstr='-var',
     ),

nipype/interfaces/afni/tests/test_auto_Bucket.py

@@ -16,11 +16,15 @@ def test_Bucket_inputs():
     mandatory=True,
     position=-1,
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     out_file=dict(argstr='-prefix %s',
     name_template='buck',
     ),
     outputtype=dict(),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = Bucket.input_spec()

nipype/interfaces/afni/tests/test_auto_Calc.py

@@ -26,6 +26,9 @@ def test_Calc_inputs():
     in_file_c=dict(argstr='-c %s',
     position=2,
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     other=dict(argstr='',
     ),
     out_file=dict(argstr='-prefix %s',
@@ -40,7 +43,8 @@ def test_Calc_inputs():
     ),
     stop_idx=dict(requires=['start_idx'],
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = Calc.input_spec()

nipype/interfaces/afni/tests/test_auto_Cat.py

@@ -18,6 +18,9 @@ def test_Cat_inputs():
     ),
     keepfree=dict(argstr='-nonfixed',
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     omitconst=dict(argstr='-nonconst',
     ),
     out_cint=dict(xor=['out_format', 'out_nice', 'out_double', 'out_fint', 'out_int'],
@@ -46,7 +49,8 @@ def test_Cat_inputs():
     ),
     stack=dict(argstr='-stack',
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = Cat.input_spec()

nipype/interfaces/afni/tests/test_auto_CatMatvec.py

@@ -25,6 +25,9 @@ def test_CatMatvec_inputs():
     descr="indicates that the resulting matrix willbe written to outfile in the 'MATRIX(...)' format (FORM 3).This feature could be used, with clever scripting, to inputa matrix directly on the command line to program 3dWarp.",
     xor=['oneline', 'fourxfour'],
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     oneline=dict(argstr='-ONELINE',
     descr='indicates that the resulting matrixwill simply be written as 12 numbers on one line.',
     xor=['matrix', 'fourxfour'],
@@ -35,7 +38,8 @@ def test_CatMatvec_inputs():
     position=-1,
     ),
     outputtype=dict(),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = CatMatvec.input_spec()

nipype/interfaces/afni/tests/test_auto_CenterMass.py

@@ -37,7 +37,8 @@ def test_CenterMass_inputs():
     ),
     set_cm=dict(argstr='-set %f %f %f',
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = CenterMass.input_spec()

nipype/interfaces/afni/tests/test_auto_ClipLevel.py

@@ -27,7 +27,8 @@ def test_ClipLevel_inputs():
     mfrac=dict(argstr='-mfrac %s',
     position=2,
     ),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = ClipLevel.input_spec()

nipype/interfaces/afni/tests/test_auto_Copy.py

@@ -17,13 +17,17 @@ def test_Copy_inputs():
     mandatory=True,
     position=-2,
     ),
+    num_threads=dict(nohash=True,
+    usedefault=True,
+    ),
     out_file=dict(argstr='%s',
     name_source='in_file',
     name_template='%s_copy',
     position=-1,
     ),
     outputtype=dict(),
-    terminal_output=dict(nohash=True,
+    terminal_output=dict(deprecated='1.0.0',
+    nohash=True,
     ),
     )
     inputs = Copy.input_spec()