numpy 1.25.0, pyright 1.1.316, mypy 1.4.1 (#741)

* numpy 1.25.0, pyright 1.1.316, mypy 1.4.1

* avoid specifying python version for mypy

Author: Dr-Irv

pandas-stubs/_libs/tslibs/timestamps.pyi

@@ -5,6 +5,7 @@ from datetime import (
     timedelta,
     tzinfo as _tzinfo,
 )
+import sys
 from time import struct_time
 from typing import (
     ClassVar,
@@ -45,6 +46,11 @@ _Nonexistent: TypeAlias = (
     Literal["raise", "NaT", "shift_backward", "shift_forward"] | Timedelta | timedelta
 )
 
+if sys.version_info >= (3, 9):
+    from datetime import _IsoCalendarDate
+else:
+    _IsoCalendarDate: TypeAlias = tuple[int, int, int]
+
 class Timestamp(datetime):
     min: ClassVar[Timestamp]
     max: ClassVar[Timestamp]
@@ -227,7 +233,7 @@ class Timestamp(datetime):
     def __ne__(self, other: object) -> Literal[True]: ...
     def weekday(self) -> int: ...
     def isoweekday(self) -> int: ...
-    def isocalendar(self) -> tuple[int, int, int]: ...
+    def isocalendar(self) -> _IsoCalendarDate: ...
     @property
     def is_leap_year(self) -> bool: ...
     @property

pyproject.toml

@@ -33,14 +33,17 @@ packages = [
 [tool.poetry.dependencies]
 python = ">=3.8"
 types-pytz = ">= 2022.1.1"
-numpy = "<=1.24.3"
+numpy = [
+    {version = "<=1.24.3", python = "<=3.8"},
+    {version = ">=1.25.0", python = ">=3.9"}
+]
 
 [tool.poetry.dev-dependencies]
-mypy = "1.3.0"
-pandas = "2.0.2"
+mypy = "1.4.1"
+pandas = "2.0.3"
 pyarrow = ">=10.0.1"
 pytest = ">=7.1.2"
-pyright = "<= 1.1.313"
+pyright = ">= 1.1.316"
 poethepoet = ">=0.16.5"
 loguru = ">=0.6.0"
 typing-extensions = ">=4.4.0"
@@ -49,7 +52,7 @@ pre-commit = ">=2.19.0"
 black = ">=23.3.0"
 isort = ">=5.12.0"
 openpyxl = ">=3.0.10"
-tables = { version = ">=3.7.0" , python = "<4"}  # 3.8.0 depends on blosc2 which caps python to <4
+tables = { version = ">=3.8.0" , python = "<4"}  # 3.8.0 depends on blosc2 which caps python to <4
 lxml = ">=4.9.1"
 pyreadstat = ">=1.2.0"
 xlrd = ">=2.0.1"
@@ -135,8 +138,6 @@ follow_imports = "normal"
 follow_imports_for_stubs = false
 no_site_packages = false
 no_silence_site_packages = false
-# Platform configuration
-python_version = "3.8"
 # Disallow dynamic typing
 disallow_any_unimported = false # TODO
 disallow_any_expr = false # TODO

tests/test_io.py

@@ -56,6 +56,7 @@
     TYPE_CHECKING_INVALID_USAGE,
     WINDOWS,
     check,
+    pytest_warns_bounded,
 )
 
 from pandas.io.api import to_pickle
@@ -371,57 +372,77 @@ def test_hdfstore():
             assert_type(store.select("df", start=0, stop=1), Union[DataFrame, Series]),
             DataFrame,
         )
-        check(
-            assert_type(store.select("df", where="index>=1"), Union[DataFrame, Series]),
-            DataFrame,
-        )
-        check(
-            assert_type(
-                store.select("df", where=Term("index>=1")),
-                Union[DataFrame, Series],
-            ),
-            DataFrame,
-        )
-        check(
-            assert_type(
-                store.select("df", where=[Term("index>=1")]),
-                Union[DataFrame, Series],
-            ),
-            DataFrame,
-        )
-        check(assert_type(store.get("df"), Union[DataFrame, Series]), DataFrame)
-        for key in store:
-            check(assert_type(key, str), str)
-        check(assert_type(store.close(), None), type(None))
+        with pytest_warns_bounded(
+            DeprecationWarning,
+            match="`alltrue` is deprecated as of NumPy 1.25.0",
+            lower="1.24.99",
+            version_str=np.__version__,
+        ):
+            check(
+                assert_type(
+                    store.select("df", where="index>=1"), Union[DataFrame, Series]
+                ),
+                DataFrame,
+            )
+            check(
+                assert_type(
+                    store.select("df", where=Term("index>=1")),
+                    Union[DataFrame, Series],
+                ),
+                DataFrame,
+            )
+            check(
+                assert_type(
+                    store.select("df", where=[Term("index>=1")]),
+                    Union[DataFrame, Series],
+                ),
+                DataFrame,
+            )
+            check(assert_type(store.get("df"), Union[DataFrame, Series]), DataFrame)
+            for key in store:
+                check(assert_type(key, str), str)
+            check(assert_type(store.close(), None), type(None))
 
-        store = HDFStore(path, model="r")
-        check(
-            assert_type(read_hdf(store, "df"), Union[DataFrame, Series]),
-            DataFrame,
-        )
-        store.close()
+            store = HDFStore(path, model="r")
+            check(
+                assert_type(read_hdf(store, "df"), Union[DataFrame, Series]),
+                DataFrame,
+            )
+            store.close()
 
 
 def test_read_hdf_iterator():
-    with ensure_clean() as path:
-        check(assert_type(DF.to_hdf(path, "df", format="table"), None), type(None))
-        ti = read_hdf(path, chunksize=1)
-        check(assert_type(ti, TableIterator), TableIterator)
-        ti.close()
+    with pytest_warns_bounded(
+        DeprecationWarning,
+        match="`alltrue` is deprecated as of NumPy 1.25.0",
+        lower="1.24.99",
+        version_str=np.__version__,
+    ):
+        with ensure_clean() as path:
+            check(assert_type(DF.to_hdf(path, "df", format="table"), None), type(None))
+            ti = read_hdf(path, chunksize=1)
+            check(assert_type(ti, TableIterator), TableIterator)
+            ti.close()
 
-        ti = read_hdf(path, "df", iterator=True)
-        check(assert_type(ti, TableIterator), TableIterator)
-        for _ in ti:
-            pass
-        ti.close()
+            ti = read_hdf(path, "df", iterator=True)
+            check(assert_type(ti, TableIterator), TableIterator)
+            for _ in ti:
+                pass
+            ti.close()
 
 
 def test_hdf_context_manager():
-    with ensure_clean() as path:
-        check(assert_type(DF.to_hdf(path, "df", format="table"), None), type(None))
-        with HDFStore(path, mode="r") as store:
-            check(assert_type(store.is_open, bool), bool)
-            check(assert_type(store.get("df"), Union[DataFrame, Series]), DataFrame)
+    with pytest_warns_bounded(
+        DeprecationWarning,
+        match="`alltrue` is deprecated as of NumPy 1.25.0",
+        lower="1.24.99",
+        version_str=np.__version__,
+    ):
+        with ensure_clean() as path:
+            check(assert_type(DF.to_hdf(path, "df", format="table"), None), type(None))
+            with HDFStore(path, mode="r") as store:
+                check(assert_type(store.is_open, bool), bool)
+                check(assert_type(store.get("df"), Union[DataFrame, Series]), DataFrame)
 
 
 def test_hdf_series():