Merge remote-tracking branch 'upstream/master' into deprecate-nonkeyword-args-dropna

Author: MarcoGorelli

.github/workflows/database.yml

@@ -70,7 +70,7 @@ jobs:
     - uses: conda-incubator/setup-miniconda@v2
       with:
         activate-environment: pandas-dev
-        channel-priority: strict
+        channel-priority: flexible
         environment-file: ${{ matrix.ENV_FILE }}
         use-only-tar-bz2: true
 

asv_bench/benchmarks/strings.py

@@ -11,6 +11,19 @@
 from .pandas_vb_common import tm
 
 
+class Dtypes:
+    params = ["str", "string", "arrow_string"]
+    param_names = ["dtype"]
+
+    def setup(self, dtype):
+        from pandas.core.arrays.string_arrow import ArrowStringDtype  # noqa: F401
+
+        try:
+            self.s = Series(tm.makeStringIndex(10 ** 5), dtype=dtype)
+        except ImportError:
+            raise NotImplementedError
+
+
 class Construction:
 
     params = ["str", "string"]
@@ -49,18 +62,7 @@ def peakmem_cat_frame_construction(self, dtype):
         DataFrame(self.frame_cat_arr, dtype=dtype)
 
 
-class Methods:
-    params = ["str", "string", "arrow_string"]
-    param_names = ["dtype"]
-
-    def setup(self, dtype):
-        from pandas.core.arrays.string_arrow import ArrowStringDtype  # noqa: F401
-
-        try:
-            self.s = Series(tm.makeStringIndex(10 ** 5), dtype=dtype)
-        except ImportError:
-            raise NotImplementedError
-
+class Methods(Dtypes):
     def time_center(self, dtype):
         self.s.str.center(100)
 
@@ -83,6 +85,9 @@ def time_find(self, dtype):
     def time_rfind(self, dtype):
         self.s.str.rfind("[A-Z]+")
 
+    def time_fullmatch(self, dtype):
+        self.s.str.fullmatch("A")
+
     def time_get(self, dtype):
         self.s.str.get(0)
 
@@ -211,35 +216,26 @@ def time_cat(self, other_cols, sep, na_rep, na_frac):
         self.s.str.cat(others=self.others, sep=sep, na_rep=na_rep)
 
 
-class Contains:
+class Contains(Dtypes):
 
-    params = (["str", "string", "arrow_string"], [True, False])
+    params = (Dtypes.params, [True, False])
     param_names = ["dtype", "regex"]
 
     def setup(self, dtype, regex):
-        from pandas.core.arrays.string_arrow import ArrowStringDtype  # noqa: F401
-
-        try:
-            self.s = Series(tm.makeStringIndex(10 ** 5), dtype=dtype)
-        except ImportError:
-            raise NotImplementedError
+        super().setup(dtype)
 
     def time_contains(self, dtype, regex):
         self.s.str.contains("A", regex=regex)
 
 
-class Split:
+class Split(Dtypes):
 
-    params = (["str", "string", "arrow_string"], [True, False])
+    params = (Dtypes.params, [True, False])
     param_names = ["dtype", "expand"]
 
     def setup(self, dtype, expand):
-        from pandas.core.arrays.string_arrow import ArrowStringDtype  # noqa: F401
-
-        try:
-            self.s = Series(tm.makeStringIndex(10 ** 5), dtype=dtype).str.join("--")
-        except ImportError:
-            raise NotImplementedError
+        super().setup(dtype)
+        self.s = self.s.str.join("--")
 
     def time_split(self, dtype, expand):
         self.s.str.split("--", expand=expand)
@@ -248,17 +244,23 @@ def time_rsplit(self, dtype, expand):
         self.s.str.rsplit("--", expand=expand)
 
 
-class Dummies:
-    params = ["str", "string", "arrow_string"]
-    param_names = ["dtype"]
+class Extract(Dtypes):
 
-    def setup(self, dtype):
-        from pandas.core.arrays.string_arrow import ArrowStringDtype  # noqa: F401
+    params = (Dtypes.params, [True, False])
+    param_names = ["dtype", "expand"]
 
-        try:
-            self.s = Series(tm.makeStringIndex(10 ** 5), dtype=dtype).str.join("|")
-        except ImportError:
-            raise NotImplementedError
+    def setup(self, dtype, expand):
+        super().setup(dtype)
+
+    def time_extract_single_group(self, dtype, expand):
+        with warnings.catch_warnings(record=True):
+            self.s.str.extract("(\\w*)A", expand=expand)
+
+
+class Dummies(Dtypes):
+    def setup(self, dtype):
+        super().setup(dtype)
+        self.s = self.s.str.join("|")
 
     def time_get_dummies(self, dtype):
         self.s.str.get_dummies("|")
@@ -279,3 +281,9 @@ def setup(self):
     def time_vector_slice(self):
         # GH 2602
         self.s.str[:5]
+
+
+class Iter(Dtypes):
+    def time_iter(self, dtype):
+        for i in self.s:
+            pass

ci/deps/actions-37-db-min.yaml

@@ -31,7 +31,8 @@ dependencies:
   - openpyxl
   - pandas-gbq
   - google-cloud-bigquery>=1.27.2 # GH 36436
-  - pyarrow=0.17 # GH 38803
+  - protobuf>=3.12.4
+  - pyarrow=0.17.1 # GH 38803
   - pytables>=3.5.1
   - scipy
   - xarray=0.12.3

ci/deps/actions-37-db.yaml

@@ -31,7 +31,7 @@ dependencies:
   - pandas-gbq
   - google-cloud-bigquery>=1.27.2 # GH 36436
   - psycopg2
-  - pyarrow>=0.15.0
+  - pyarrow>=0.17.0
   - pymysql
   - pytables
   - python-snappy

ci/deps/actions-37-minimum_versions.yaml

@@ -23,7 +23,7 @@ dependencies:
   - pytables=3.5.1
   - python-dateutil=2.7.3
   - pytz=2017.3
-  - pyarrow=0.15
+  - pyarrow=0.17.0
   - scipy=1.2
   - xlrd=1.2.0
   - xlsxwriter=1.0.2

ci/deps/actions-37.yaml

@@ -18,7 +18,7 @@ dependencies:
   - numpy=1.19
   - python-dateutil
   - nomkl
-  - pyarrow=0.15.1
+  - pyarrow
   - pytz
   - s3fs>=0.4.0
   - moto>=1.3.14

ci/deps/azure-macos-37.yaml

@@ -1,6 +1,7 @@
 name: pandas-dev
 channels:
   - defaults
+  - conda-forge
 dependencies:
   - python=3.7.*
 
@@ -21,7 +22,7 @@ dependencies:
   - numexpr
   - numpy=1.17.3
   - openpyxl
-  - pyarrow=0.15.1
+  - pyarrow=0.17.0
   - pytables
   - python-dateutil==2.7.3
   - pytz

ci/deps/azure-windows-37.yaml

@@ -26,7 +26,7 @@ dependencies:
   - numexpr
   - numpy=1.17.*
   - openpyxl
-  - pyarrow=0.15
+  - pyarrow=0.17.0
   - pytables
   - python-dateutil
   - pytz

ci/deps/azure-windows-38.yaml

@@ -25,7 +25,7 @@ dependencies:
   - numpy=1.18.*
   - openpyxl
   - jinja2
-  - pyarrow>=0.15.0
+  - pyarrow>=0.17.0
   - pytables
   - python-dateutil
   - pytz

ci/run_tests.sh

@@ -24,7 +24,7 @@ PYTEST_CMD="${XVFB}pytest -m \"$PATTERN\" -n $PYTEST_WORKERS --dist=loadfile $TE
 if [[ $(uname) != "Linux"  && $(uname) != "Darwin" ]]; then
     # GH#37455 windows py38 build appears to be running out of memory
     #  skip collection of window tests
-    PYTEST_CMD="$PYTEST_CMD --ignore=pandas/tests/window/ --ignore=pandas/tests/plotting/"
+    PYTEST_CMD="$PYTEST_CMD --ignore=pandas/tests/window/moments --ignore=pandas/tests/plotting/"
 fi
 
 echo $PYTEST_CMD

doc/redirects.csv

@@ -1197,6 +1197,7 @@ generated/pandas.Series.str.extractall,../reference/api/pandas.Series.str.extrac
 generated/pandas.Series.str.extract,../reference/api/pandas.Series.str.extract
 generated/pandas.Series.str.findall,../reference/api/pandas.Series.str.findall
 generated/pandas.Series.str.find,../reference/api/pandas.Series.str.find
+generated/pandas.Series.str.fullmatch,../reference/api/pandas.Series.str.fullmatch
 generated/pandas.Series.str.get_dummies,../reference/api/pandas.Series.str.get_dummies
 generated/pandas.Series.str.get,../reference/api/pandas.Series.str.get
 generated/pandas.Series.str,../reference/api/pandas.Series.str

doc/source/getting_started/install.rst

@@ -358,7 +358,7 @@ PyTables                  3.5.1              HDF5-based reading / writing
 blosc                     1.17.0             Compression for HDF5
 zlib                                         Compression for HDF5
 fastparquet               0.4.0              Parquet reading / writing
-pyarrow                   0.15.0             Parquet, ORC, and feather reading / writing
+pyarrow                   0.17.0             Parquet, ORC, and feather reading / writing
 pyreadstat                                   SPSS files (.sav) reading
 ========================= ================== =============================================================
 

doc/source/reference/series.rst

@@ -415,6 +415,7 @@ strings and apply several methods to it. These can be accessed like
    Series.str.extractall
    Series.str.find
    Series.str.findall
+   Series.str.fullmatch
    Series.str.get
    Series.str.index
    Series.str.join

doc/source/whatsnew/v1.3.0.rst

@@ -224,10 +224,11 @@ Other enhancements
 - :meth:`pandas.read_csv` and :meth:`pandas.read_json` expose the argument ``encoding_errors`` to control how encoding errors are handled (:issue:`39450`)
 - :meth:`.GroupBy.any` and :meth:`.GroupBy.all` use Kleene logic with nullable data types (:issue:`37506`)
 - :meth:`.GroupBy.any` and :meth:`.GroupBy.all` return a ``BooleanDtype`` for columns with nullable data types (:issue:`33449`)
+- :meth:`.GroupBy.rank` now supports object-dtype data (:issue:`38278`)
 - Constructing a :class:`DataFrame` or :class:`Series` with the ``data`` argument being a Python iterable that is *not* a NumPy ``ndarray`` consisting of NumPy scalars will now result in a dtype with a precision the maximum of the NumPy scalars; this was already the case when ``data`` is a NumPy ``ndarray`` (:issue:`40908`)
 - Add keyword ``sort`` to :func:`pivot_table` to allow non-sorting of the result (:issue:`39143`)
 - Add keyword ``dropna`` to :meth:`DataFrame.value_counts` to allow counting rows that include ``NA`` values (:issue:`41325`)
--
+- :meth:`Series.replace` will now cast results to ``PeriodDtype`` where possible instead of ``object`` dtype (:issue:`41526`)
 
 .. ---------------------------------------------------------------------------
 
@@ -578,7 +579,7 @@ Optional libraries below the lowest tested version may still work, but are not c
 +-----------------+-----------------+---------+
 | openpyxl        | 3.0.0           |    X    |
 +-----------------+-----------------+---------+
-| pyarrow         | 0.15.0          |         |
+| pyarrow         | 0.17.0          |    X    |
 +-----------------+-----------------+---------+
 | pymysql         | 0.8.1           |    X    |
 +-----------------+-----------------+---------+
@@ -647,7 +648,9 @@ Deprecations
 - Deprecated setting :attr:`Categorical._codes`, create a new :class:`Categorical` with the desired codes instead (:issue:`40606`)
 - Deprecated behavior of :meth:`DatetimeIndex.union` with mixed timezones; in a future version both will be cast to UTC instead of object dtype (:issue:`39328`)
 - Deprecated using ``usecols`` with out of bounds indices for ``read_csv`` with ``engine="c"`` (:issue:`25623`)
-- Deprecated passing arguments as positional in :meth:`DataFrame.dropna` and :meth:`Series.dropna` (:issue:`41485`)
+- Deprecated passing arguments as positional in (:issue:`41485`) :
+  - :meth:`DataFrame.interpolate` (other than ``"method"``) and :meth:`Series.interpolate`
+  - :meth:`DataFrame.dropna` and :meth:`Series.dropna`
 
 .. ---------------------------------------------------------------------------
 
@@ -673,6 +676,7 @@ Performance improvements
 - Performance improvement for concatenation of data with type :class:`CategoricalDtype` (:issue:`40193`)
 - Performance improvement in :meth:`.GroupBy.cummin` and :meth:`.GroupBy.cummax` with nullable data types (:issue:`37493`)
 - Performance improvement in :meth:`Series.nunique` with nan values (:issue:`40865`)
+- Performance improvement in :meth:`DataFrame.transpose`, :meth:`Series.unstack` with ``DatetimeTZDtype`` (:issue:`40149`)
 
 .. ---------------------------------------------------------------------------
 
@@ -972,6 +976,7 @@ Other
 - Bug in :func:`pandas.util.show_versions` where console JSON output was not proper JSON (:issue:`39701`)
 - Bug in :meth:`DataFrame.convert_dtypes` incorrectly raised ValueError when called on an empty DataFrame (:issue:`40393`)
 - Bug in :meth:`DataFrame.clip` not interpreting missing values as no threshold (:issue:`40420`)
+- Bug in :class:`Series` backed by :class:`DatetimeArray` or :class:`TimedeltaArray` sometimes failing to set the array's ``freq`` to ``None`` (:issue:`41425`)
 
 .. ---------------------------------------------------------------------------
 

environment.yml

@@ -100,7 +100,7 @@ dependencies:
   - odfpy
 
   - fastparquet>=0.3.2  # pandas.read_parquet, DataFrame.to_parquet
-  - pyarrow>=0.15.0  # pandas.read_parquet, DataFrame.to_parquet, pandas.read_feather, DataFrame.to_feather
+  - pyarrow>=0.17.0  # pandas.read_parquet, DataFrame.to_parquet, pandas.read_feather, DataFrame.to_feather
   - python-snappy  # required by pyarrow
 
   - pyqt>=5.9.2  # pandas.read_clipboard

pandas/_libs/lib.pyi

@@ -40,7 +40,6 @@ def is_integer(val: object) -> bool: ...
 def is_float(val: object) -> bool: ...
 
 def is_interval_array(values: np.ndarray) -> bool: ...
-def is_period_array(values: np.ndarray) -> bool: ...
 def is_datetime64_array(values: np.ndarray) -> bool: ...
 def is_timedelta_or_timedelta64_array(values: np.ndarray) -> bool: ...
 def is_datetime_with_singletz_array(values: np.ndarray) -> bool: ...
@@ -67,50 +66,60 @@ def map_infer(
 @overload  # both convert_datetime and convert_to_nullable_integer False -> np.ndarray
 def maybe_convert_objects(
     objects: np.ndarray,  # np.ndarray[object]
+    *,
     try_float: bool = ...,
     safe: bool = ...,
     convert_datetime: Literal[False] = ...,
     convert_timedelta: bool = ...,
+    convert_period: Literal[False] = ...,
     convert_to_nullable_integer: Literal[False] = ...,
 ) -> np.ndarray: ...
 
 @overload
 def maybe_convert_objects(
     objects: np.ndarray,  # np.ndarray[object]
+    *,
     try_float: bool = ...,
     safe: bool = ...,
-    convert_datetime: Literal[False] = False,
+    convert_datetime: bool = ...,
     convert_timedelta: bool = ...,
+    convert_period: bool = ...,
     convert_to_nullable_integer: Literal[True] = ...,
 ) -> ArrayLike: ...
 
 @overload
 def maybe_convert_objects(
     objects: np.ndarray,  # np.ndarray[object]
+    *,
     try_float: bool = ...,
     safe: bool = ...,
     convert_datetime: Literal[True] = ...,
     convert_timedelta: bool = ...,
-    convert_to_nullable_integer: Literal[False] = ...,
+    convert_period: bool = ...,
+    convert_to_nullable_integer: bool = ...,
 ) -> ArrayLike: ...
 
 @overload
 def maybe_convert_objects(
     objects: np.ndarray,  # np.ndarray[object]
+    *,
     try_float: bool = ...,
     safe: bool = ...,
-    convert_datetime: Literal[True] = ...,
+    convert_datetime: bool = ...,
     convert_timedelta: bool = ...,
-    convert_to_nullable_integer: Literal[True] = ...,
+    convert_period: Literal[True] = ...,
+    convert_to_nullable_integer: bool = ...,
 ) -> ArrayLike: ...
 
 @overload
 def maybe_convert_objects(
     objects: np.ndarray,  # np.ndarray[object]
+    *,
     try_float: bool = ...,
     safe: bool = ...,
     convert_datetime: bool = ...,
     convert_timedelta: bool = ...,
+    convert_period: bool = ...,
     convert_to_nullable_integer: bool = ...,
 ) -> ArrayLike: ...