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ferrineferrine
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refresh github actions and use pyproject.toml
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‎.github/workflows/nightly.yml

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@@ -9,10 +9,10 @@ jobs:
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if: github.repository == 'pymc-devs/pytensor'
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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with:
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fetch-depth: 0
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- uses: actions/setup-python@v2
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- uses: actions/setup-python@v3
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with:
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python-version: "3.9"
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- name: Install dependencies

‎.github/workflows/pypi.yml

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@@ -17,28 +17,47 @@ concurrency:
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cancel-in-progress: true
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jobs:
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# The job to build pypi wheels users can installed precompiled for them.
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# At the moment only linux wheels are build, Windows and MacOS will compile on installation
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# Before prebuilds all users had to compile code anyway.
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build:
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strategy:
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matrix:
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python-version: ["3.7", "3.8", "3.9", "3.10"]
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name: Build source distribution
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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with:
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fetch-depth: 0
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- uses: actions/setup-python@v2
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- uses: actions/setup-python@v3
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with:
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python-version: "3.8"
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python-version: ${{ matrix.python-version }}
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- name: Build the sdist and the wheel
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run: |
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pip install wheel
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python setup.py sdist bdist_wheel
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pip install build
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python -m build
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- name: Check the sdist installs and imports
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run: |
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mkdir -p test-sdist
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cd test-sdist
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python -m venv venv-sdist
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venv-sdist/bin/python -m pip install ../dist/pytensor-*.tar.gz
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# check import
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venv-sdist/bin/python -c "import pytensor;print(pytensor.__version__)"
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- uses: actions/upload-artifact@v2
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# check import cython module
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venv-sdist/bin/python -c 'from pytensor.scan import scan_perform; print(scan_perform.get_version())'
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- name: Check the bdist installs and imports
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run: |
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mkdir -p test-bdist
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cd test-bdist
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python -m venv venv-bdist
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venv-bdist/bin/python -m pip install ../dist/pytensor-*.whl
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# check import
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venv-bdist/bin/python -c "import pytensor;print(pytensor.__version__)"
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# check import cython module
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venv-bdist/bin/python -c 'from pytensor.scan import scan_perform; print(scan_perform.get_version())'
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- uses: actions/upload-artifact@v3
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with:
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name: artifact
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path: dist/*
@@ -49,7 +68,7 @@ jobs:
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runs-on: ubuntu-latest
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if: github.event_name == 'release' && github.event.action == 'published'
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steps:
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- uses: actions/download-artifact@v2
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- uses: actions/download-artifact@v3
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with:
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name: artifact
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path: dist

‎.github/workflows/test.yml

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@@ -23,7 +23,7 @@ jobs:
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outputs:
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changes: ${{ steps.changes.outputs.src }}
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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with:
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fetch-depth: 0
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- uses: dorny/paths-filter@v2
@@ -52,7 +52,7 @@ jobs:
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runs-on: ubuntu-latest
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if: ${{ needs.changes.outputs.changes == 'true' }}
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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- uses: actions/setup-python@v2
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with:
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python-version: '3.9'
@@ -90,7 +90,7 @@ jobs:
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install-numba: 1
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part: "tests --ignore=tests/tensor/nnet --ignore=tests/tensor/signal"
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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with:
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fetch-depth: 0
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- name: Set up Python ${{ matrix.python-version }}
@@ -110,7 +110,7 @@ jobs:
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echo $MATRIX_CONTEXT
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export MATRIX_ID=`echo $MATRIX_CONTEXT | md5sum | cut -c 1-32`
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echo $MATRIX_ID
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echo "::set-output name=id::$MATRIX_ID"
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echo "id=$MATRIX_ID" >> $GITHUB_OUTPUT
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- name: Install dependencies
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shell: bash -l {0}
@@ -143,7 +143,7 @@ jobs:
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FLOAT32: ${{ matrix.float32 }}
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- name: Upload coverage file
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uses: actions/upload-artifact@v2
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uses: actions/upload-artifact@v3
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with:
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name: coverage
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path: coverage/coverage-${{ steps.matrix-id.outputs.id }}.xml
@@ -164,7 +164,7 @@ jobs:
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needs: [changes, all-checks]
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if: ${{ needs.changes.outputs.changes == 'true' && needs.all-checks.result == 'success' }}
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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- name: Set up Python
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uses: actions/setup-python@v1

‎pyproject.toml

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@@ -0,0 +1,208 @@
1+
[build-system]
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requires = [
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"setuptools>=48.0.0",
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"cython",
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"numpy>=1.17.0",
6+
"versioneer[toml]==0.28",
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]
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build-backend = "setuptools.build_meta"
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[project]
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name = "pytensor"
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dynamic = [
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'version'
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]
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requires-python = ">=3.7"
16+
authors = [
17+
{name = "pymc-devs", email = "[email protected]"}
18+
]
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description = "Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs."
20+
readme = "DESCRIPTION.txt"
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license = {file = "LICENCE.txt"}
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classifiers = [
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"Development Status :: 6 - Mature",
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"Intended Audience :: Education",
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"Intended Audience :: Science/Research",
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"Intended Audience :: Developers",
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"License :: OSI Approved :: BSD License",
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"Programming Language :: Python",
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"Topic :: Software Development :: Code Generators",
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"Topic :: Software Development :: Compilers",
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"Topic :: Scientific/Engineering :: Mathematics",
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"Operating System :: Microsoft :: Windows",
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"Operating System :: POSIX",
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"Operating System :: Unix",
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"Operating System :: MacOS",
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"Programming Language :: Python :: 3",
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"Programming Language :: Python :: 3.7",
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"Programming Language :: Python :: 3.8",
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"Programming Language :: Python :: 3.9",
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"Programming Language :: Python :: 3.10",
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]
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keywords = [
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"pytensor",
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"math",
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"numerical",
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"symbolic",
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"blas",
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"numpy",
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"autodiff",
51+
"differentiation",
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]
53+
dependencies = [
54+
"setuptools>=48.0.0",
55+
"scipy>=0.14",
56+
"numpy>=1.17.0",
57+
"filelock",
58+
"etuples",
59+
"logical-unification",
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"miniKanren",
61+
"cons",
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"typing_extensions",
63+
]
64+
65+
[project.urls]
66+
homepage = "https://github.com/pymc-devs/pytensor"
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repository = "https://github.com/pymc-devs/pytensor"
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documentation = "https://pytensor.readthedocs.io/en/latest/"
69+
70+
71+
[project.scripts]
72+
pytensor-cache = "bin.pytensor_cache:main"
73+
74+
[project.optional-dependencies]
75+
complete = [
76+
"pytensor[jax]",
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"pytensor[numba]",
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]
79+
development = [
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"pytensor[complete]",
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"pytensor[tests]",
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"pytensor[rtd]"
83+
]
84+
tests = [
85+
"pytest",
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"pre-commit",
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"pytest-cov>=2.6.1",
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"coverage>=5.1",
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]
90+
rtd = [
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"sphinx>=1.3.0",
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"sphinx_rtd_theme",
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"pygments",
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"pydot",
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"pydot2",
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"pydot-ng",
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]
98+
jax = [
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"jax",
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"jaxlib",
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]
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numba = [
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"numba>=0.55",
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"numba-scipy>=0.3.0"
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]
106+
107+
[tool.setuptools.packages.find]
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exclude = [
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"tests",
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"tests.*"
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]
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[tool.setuptools.package-data]
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"*" = [
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"*.txt",
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"*.rst",
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"*.cu",
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"*.cuh",
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"*.c",
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"*.sh",
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"*.pkl",
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"*.h",
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"*.cpp",
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"ChangeLog",
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"c_code/*",
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]
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pytensor = [
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"py.typed"
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]
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"pytensor.misc" = [
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"*.sh"
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]
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"pytensor.d3viz" = [
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"html/*",
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"css/*",
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"js/*",
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]
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[tool.coverage.run]
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omit = [
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"pytensor/_version.py",
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"tests/*",
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"pytensor/assert_op.py",
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"pytensor/graph/opt.py",
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"pytensor/graph/opt_utils.py",
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"pytensor/graph/optdb.py",
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"pytensor/graph/kanren.py",
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"pytensor/graph/unify.py",
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"pytensor/link/jax/jax_linker.py",
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"pytensor/link/jax/jax_dispatch.py",
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"pytensor/graph/toolbox.py",
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"pytensor/scalar/basic_scipy.py",
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]
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branch = true
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relative_files = true
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157+
[tool.coverage.report]
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omit = [
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"pytensor/_version.py",
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"tests/",
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]
162+
exclude_lines = [
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"pragma: no cover",
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"if TYPE_CHECKING:",
165+
]
166+
show_missing = true
167+
168+
[tool.versioneer]
169+
VCS = "git"
170+
style = "pep440"
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versionfile_source = "pytensor/_version.py"
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versionfile_build = "pytensor/_version.py"
173+
tag_prefix = "rel-"
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175+
[tool.pytest]
176+
addopts = "--durations=50"
177+
testpaths = "tests/"
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179+
[tool.pylint]
180+
max-line-length = 88
181+
182+
[tool.pylint.messages_control]
183+
disable = ["C0330", "C0326"]
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[tool.isort]
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profile = "black"
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lines_after_imports = 2
188+
lines_between_sections = 1
189+
honor_noqa = true
190+
skip_gitignore = true
191+
skip = "pytensor/version.py"
192+
skip_glob = "**/*.pyx"
193+
194+
[tool.mypy]
195+
ignore_missing_imports = true
196+
no_implicit_optional = true
197+
check_untyped_defs = false
198+
strict_equality = true
199+
warn_redundant_casts = true
200+
warn_unused_configs = true
201+
warn_unused_ignores = true
202+
warn_return_any = true
203+
warn_no_return = false
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warn_unreachable = true
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show_error_codes = true
206+
allow_redefinition = false
207+
files = ["pytensor", "tests"]
208+
plugins = ["numpy.typing.mypy_plugin"]

‎requirements-rtd.txt

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This file was deleted.

‎requirements.txt

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This file was deleted.

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