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Merge pull request #1 from pandas-dev/master
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‎.devcontainer.json

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"python.linting.pylintEnabled": false,
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"python.linting.mypyEnabled": true,
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"python.testing.pytestEnabled": true,
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"python.testing.cwd": "pandas/tests"
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"python.testing.pytestArgs": [
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"pandas"
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]
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},
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// Add the IDs of extensions you want installed when the container is created in the array below.

‎.github/CODE_OF_CONDUCT.md

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[homepage]: https://www.contributor-covenant.org
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[version]: https://www.contributor-covenant.org/version/1/3/0/
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[swift]: https://swift.org/community/#code-of-conduct
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‎.github/ISSUE_TEMPLATE/documentation_improvement.md

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@@ -9,7 +9,7 @@ labels: "Docs, Needs Triage"
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#### Location of the documentation
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[this should provide the location of the documentation, e.g. "pandas.read_csv" or the URL of the documentation, e.g. "https://dev.pandas.io/docs/reference/api/pandas.read_csv.html"]
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[this should provide the location of the documentation, e.g. "pandas.read_csv" or the URL of the documentation, e.g. "https://pandas.pydata.org/docs/reference/api/pandas.read_csv.html"]
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**Note**: You can check the latest versions of the docs on `master` [here](https://pandas.pydata.org/docs/dev/).
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‎.github/PULL_REQUEST_TEMPLATE.md

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- [ ] closes #xxxx
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- [ ] tests added / passed
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- [ ] passes `black pandas`
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- [ ] passes `git diff upstream/master -u -- "*.py" | flake8 --diff`
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- [ ] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
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- [ ] whatsnew entry

‎.github/actions/build_pandas/action.yml

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name: Build pandas
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description: Rebuilds the C extensions and installs pandas
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runs:
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using: composite
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steps:
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- name: Environment Detail
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run: |
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conda info
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conda list
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shell: bash -l {0}
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- name: Build Pandas
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run: |
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python setup.py build_ext -j 2
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python -m pip install -e . --no-build-isolation --no-use-pep517
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shell: bash -l {0}

‎.github/actions/setup/action.yml

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name: Set up pandas
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description: Runs all the setup steps required to have a built pandas ready to use
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runs:
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using: composite
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steps:
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- name: Setting conda path
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run: echo "${HOME}/miniconda3/bin" >> $GITHUB_PATH
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shell: bash -l {0}
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- name: Setup environment and build pandas
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run: ci/setup_env.sh
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shell: bash -l {0}

‎.github/workflows/autoupdate-pre-commit-config.yml

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name: "Update pre-commit config"
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on:
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schedule:
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- cron: "0 7 * * 1" # At 07:00 on each Monday.
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workflow_dispatch:
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jobs:
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update-pre-commit:
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if: github.repository_owner == 'pandas-dev'
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name: Autoupdate pre-commit config
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runs-on: ubuntu-latest
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steps:
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- name: Set up Python
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uses: actions/setup-python@v2
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- name: Cache multiple paths
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uses: actions/cache@v2
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with:
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path: |
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~/.cache/pre-commit
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~/.cache/pip
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key: pre-commit-autoupdate-${{ runner.os }}-build
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- name: Update pre-commit config packages
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uses: technote-space/create-pr-action@v2
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with:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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EXECUTE_COMMANDS: |
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pip install pre-commit
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pre-commit autoupdate || (exit 0);
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pre-commit run -a || (exit 0);
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COMMIT_MESSAGE: "⬆️ UPGRADE: Autoupdate pre-commit config"
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PR_BRANCH_NAME: "pre-commit-config-update-${PR_ID}"
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PR_TITLE: "⬆️ UPGRADE: Autoupdate pre-commit config"

‎.github/workflows/ci.yml

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on:
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push:
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branches: master
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branches: [master]
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pull_request:
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branches: master
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branches:
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- master
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- 1.2.x
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env:
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ENV_FILE: environment.yml
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PANDAS_CI: 1
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jobs:
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checks:
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name: Checks
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runs-on: ubuntu-latest
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steps:
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- name: Setting conda path
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run: echo "::add-path::${HOME}/miniconda3/bin"
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defaults:
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run:
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shell: bash -l {0}
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steps:
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- name: Checkout
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uses: actions/checkout@v1
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- name: Looking for unwanted patterns
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run: ci/code_checks.sh patterns
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if: always()
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- name: Setup environment and build pandas
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run: ci/setup_env.sh
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if: always()
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- name: Cache conda
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uses: actions/cache@v2
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with:
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path: ~/conda_pkgs_dir
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key: ${{ runner.os }}-conda-${{ hashFiles('${{ env.ENV_FILE }}') }}
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- name: Linting
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run: |
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source activate pandas-dev
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ci/code_checks.sh lint
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if: always()
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- uses: conda-incubator/setup-miniconda@v2
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with:
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activate-environment: pandas-dev
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channel-priority: strict
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environment-file: ${{ env.ENV_FILE }}
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use-only-tar-bz2: true
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- name: Dependencies consistency
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run: |
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source activate pandas-dev
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ci/code_checks.sh dependencies
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- name: Build Pandas
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uses: ./.github/actions/build_pandas
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- name: Linting
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run: ci/code_checks.sh lint
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if: always()
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- name: Checks on imported code
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run: |
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source activate pandas-dev
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ci/code_checks.sh code
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run: ci/code_checks.sh code
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if: always()
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- name: Running doctests
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run: |
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source activate pandas-dev
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ci/code_checks.sh doctests
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run: ci/code_checks.sh doctests
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if: always()
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- name: Docstring validation
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run: |
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source activate pandas-dev
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ci/code_checks.sh docstrings
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run: ci/code_checks.sh docstrings
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if: always()
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- name: Typing validation
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run: |
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source activate pandas-dev
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ci/code_checks.sh typing
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run: ci/code_checks.sh typing
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if: always()
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- name: Testing docstring validation script
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run: |
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source activate pandas-dev
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pytest --capture=no --strict scripts
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run: pytest --capture=no --strict-markers scripts
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if: always()
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- name: Running benchmarks
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run: |
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source activate pandas-dev
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cd asv_bench
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asv check -E existing
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git remote add upstream https://github.com/pandas-dev/pandas.git
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git fetch upstream
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if git diff upstream/master --name-only | grep -q "^asv_bench/"; then
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asv machine --yes
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asv dev | sed "/failed$/ s/^/##[error]/" | tee benchmarks.log
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if grep "failed" benchmarks.log > /dev/null ; then
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exit 1
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fi
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else
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echo "Benchmarks did not run, no changes detected"
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asv machine --yes
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asv dev | sed "/failed$/ s/^/##[error]/" | tee benchmarks.log
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if grep "failed" benchmarks.log > /dev/null ; then
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exit 1
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fi
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if: always()
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runs-on: ubuntu-latest
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steps:
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- name: Setting conda path
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run: echo "::set-env name=PATH::${HOME}/miniconda3/bin:${PATH}"
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- name: Checkout
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uses: actions/checkout@v1
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- name: Setup environment and build pandas
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run: ci/setup_env.sh
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- name: Set up pandas
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uses: ./.github/actions/setup
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- name: Build website
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source activate pandas-dev
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python web/pandas_web.py web/pandas --target-path=web/build
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- name: Build documentation
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run: |
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source activate pandas-dev
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# This can be removed when the ipython directive fails when there are errors,
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# including the `tee sphinx.log` in te previous step (https://github.com/ipython/ipython/issues/11547)
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- name: Check ipython directive errors
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run: "! grep -B1 \"^<<<-------------------------------------------------------------------------$\" sphinx.log"
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run: "! grep -B10 \"^<<<-------------------------------------------------------------------------$\" sphinx.log"
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- name: Install ssh key
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run: |
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- name: Upload dev docs
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run: rsync -az --delete doc/build/html/ docs@${{ secrets.server_ip }}:/usr/share/nginx/pandas/pandas-docs/dev
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if: github.event_name == 'push'
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- name: Move docs into site directory
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run: mv doc/build/html web/build/docs
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- name: Save website as an artifact
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uses: actions/upload-artifact@v2
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with:
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name: website
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path: web/build
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retention-days: 14
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data_manager:
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name: Test experimental data manager
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runs-on: ubuntu-latest
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strategy:
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matrix:
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pattern: ["not slow and not network and not clipboard", "slow"]
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steps:
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- name: Checkout
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uses: actions/checkout@v1
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- name: Set up pandas
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uses: ./.github/actions/setup
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- name: Run tests
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env:
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PANDAS_DATA_MANAGER: array
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PATTERN: ${{ matrix.pattern }}
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PYTEST_WORKERS: "auto"
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run: |
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source activate pandas-dev
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ci/run_tests.sh
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- name: Print skipped tests
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run: python ci/print_skipped.py

‎.github/workflows/comment_bot.yml

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name: Comment-bot
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on:
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issue_comment:
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types:
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- created
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- edited
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jobs:
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autotune:
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name: "Fixup pre-commit formatting"
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if: startsWith(github.event.comment.body, '@github-actions pre-commit')
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/pr-fetch@master
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}
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- name: Cache multiple paths
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uses: actions/cache@v2
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with:
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path: |
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~/.cache/pre-commit
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~/.cache/pip
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key: pre-commit-dispatched-${{ runner.os }}-build
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- uses: actions/setup-python@v2
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with:
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python-version: 3.8
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- name: Install-pre-commit
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run: python -m pip install --upgrade pre-commit
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- name: Run pre-commit
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run: pre-commit run --from-ref=origin/master --to-ref=HEAD --all-files || (exit 0)
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- name: Commit results
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run: |
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git config user.name "$(git log -1 --pretty=format:%an)"
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git config user.email "$(git log -1 --pretty=format:%ae)"
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git commit -a -m 'Fixes from pre-commit [automated commit]' || echo "No changes to commit"
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- uses: r-lib/actions/pr-push@master
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}

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