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‎revdep/README.md

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# Platform
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|field |value |
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|:--------|:--------------------------------------------------|
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|version |R Under development (unstable) (2019-03-18 r76245) |
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|os |macOS High Sierra 10.13.6 |
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|system |x86_64, darwin15.6.0 |
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|ui |X11 |
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|language |(EN) |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/New_York |
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|date |2019-03-27 |
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|field |value |
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|:--------|:----------------------------|
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|version |R version 3.6.0 (2019-04-26) |
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|os |macOS High Sierra 10.13.6 |
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|system |x86_64, darwin15.6.0 |
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|ui |X11 |
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|language |(EN) |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/New_York |
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|date |2019-05-24 |
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# Dependencies
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|package |old |new |Δ |
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|:-------|:-----|:----------|:--|
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|ggplot2 |3.1.0 |3.1.0.9000 |* |
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|ggplot2 |3.1.1 |3.1.1.9000 |* |
2020

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# Revdeps
2222

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## Couldn't check (9)
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## Failed to check (113)
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|package |version |error |warning |note |source |
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|:---------------|:-------|:-----|:-------|:----|:---------------------------------------------------------------|
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|annotatr |? | | | |[cran/annotatr](https://github.com/cran/annotatr) |
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|ChIPseeker |? | | | |[cran/ChIPseeker](https://github.com/cran/ChIPseeker) |
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|clusterProfiler |? | | | |[cran/clusterProfiler](https://github.com/cran/clusterProfiler) |
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|fgsea |? | | | |[cran/fgsea](https://github.com/cran/fgsea) |
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|LINC |? | | | |[cran/LINC](https://github.com/cran/LINC) |
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|MEAL |? | | | |[cran/MEAL](https://github.com/cran/MEAL) |
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|methylGSA |? | | | |[cran/methylGSA](https://github.com/cran/methylGSA) |
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|ReactomePA |? | | | |[cran/ReactomePA](https://github.com/cran/ReactomePA) |
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|SMITE |? | | | |[cran/SMITE](https://github.com/cran/SMITE) |
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|package |version |error |warning |note |
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|:--------------------------------|:---------|:---------|:-------|:----|
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|aslib |0.1 |1 | | |
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|BaalChIP |1.8.0 |1 | |2 |
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|BACA |1.3 |1 | | |
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|BACCT |1.0 |1 | | |
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|bamdit |3.2.1 |1 | | |
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|BayesRS |0.1.3 |1 | | |
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|BMSC |0.2.0 |1 | | |
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|BNSP |2.0.9 |1 | | |
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|BPEC |1.3.0 |1 | | |
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|bsam |1.1.2 |1 | | |
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|BTSPAS |2014.0901 |1 | |1 |
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|CaliCo |0.1.1 |1 | | |
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|ChIPseeker |? | | | |
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|chromstaR |1.8.1 |1 | | |
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|clusterProfiler |? | | | |
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|CNVrd2 |1.20.0 |1 | | |
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|CollapsABEL |0.10.11 |1 | | |
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|colorednoise |1.0.4 |1 | | |
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|crmPack |0.2.9 |1 | | |
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|Crossover |0.1-18 |1 | | |
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|CTDquerier |1.2.0 |1 | |2 |
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|DaMiRseq |1.6.2 |1 | | |
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|Deducer |0.7-9 |1 | | |
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|[DeLorean](failures.md#delorean) |1.5.0 |__+1__ | |-3 |
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|DiffBind |2.10.0 |1 | |3 |
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|DiversityOccupancy |1.0.6 |1 | | |
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|dynfrail |0.5.2 |1 | | |
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|dynr |0.1.14-9 |1 | | |
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|eegc |1.8.1 |1 |1 |2 |
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|EGSEA |1.10.1 |1 | | |
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|esATAC |1.4.5 |1 | |2 |
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|evoper |0.5.0 |1 | | |
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|ewoc |0.2.0 |1 | | |
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|fgsea |? | | | |
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|fingerPro |1.1 |1 | | |
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|fsdaR |0.4-6 |1 | | |
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|G2Sd |2.1.5 |1 | | |
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|GARS |1.2.0 |1 | | |
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|ggbio |1.30.0 |1 | |1 |
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|growthPheno |1.0-13 |1 | | |
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|HPAanalyze |1.0.0 |1 | | |
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|iBMQ |1.22.0 |1 | |1 |
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|iCNV |1.2.1 |1 | | |
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|ideal |1.6.1 |1 | |1 |
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|imageData |0.1-59 |1 | | |
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|imbalance |1.0.0 |1 | | |
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|Imetagene |1.12.0 |1 | | |
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|InSilicoVA |1.2.5 |1 | | |
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|jarbes |1.7.2 |1 | | |
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|joineRML |0.4.2 |1 | | |
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|JointAI |0.5.1 |1 | | |
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|likeLTD |6.3.0 |1 | | |
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|lilikoi |0.1.0 |1 | | |
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|[lime](failures.md#lime) |0.4.1 |-1 __+1__ | | |
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|LINC |? | | | |
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|llama |0.9.2 |1 | | |
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|LLSR |0.0.2.19 |1 | | |
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|matchingMarkets |1.0-1 |1 | | |
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|mbgraphic |1.0.1 |1 | | |
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|mcmcabn |0.1 |1 | | |
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|MEAL |? | | | |
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|MetaStan |0.1.0 |1 | | |
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|methylGSA |? | | | |
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|mleap |0.1.3 |1 | | |
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|morse |3.2.2 |1 | | |
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|MSnbase |2.8.3 |2 | |6 |
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|mwaved |1.1.6 |1 | | |
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|netSmooth |1.2.0 |1 | |1 |
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|NPflow |0.13.1 |1 | | |
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|oceanis |0.8.4 |1 | | |
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|OpenStreetMap |0.3.3 |1 | | |
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|openVA |1.0.8 |1 | | |
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|petro.One |0.2.3 |1 | | |
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|phase1PRMD |1.0.1 |1 | | |
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|phase1RMD |1.0.8 |1 | | |
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|pimeta |1.1.2 |1 | | |
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|poppr |2.8.2 |1 | | |
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|PortfolioEffectHFT |1.8 |1 | | |
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|psygenet2r |1.14.0 |1 |1 |3 |
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|qdap |2.3.2 |1 | | |
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|rcellminer |2.4.0 |1 | |1 |
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|RcmdrPlugin.FuzzyClust |1.1 |1 | | |
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|RDAVIDWebService |1.20.0 |1 | | |
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|Rdrools |1.1.1 |1 | | |
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|RDS |0.8-1 |1 | | |
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|ReactomePA |? | | | |
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|[RITAN](failures.md#ritan) |1.6.0 |-1 __+1__ |2 |3 |
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|rmcfs |1.3.0 |1 | | |
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|RnBeads |2.0.1 |1 | |2 |
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|robustHD |0.5.1 |1 | | |
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|rpanel |1.1-4 |1 | | |
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|rpf |0.62 |1 | | |
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|rrepast |0.7.0 |1 | | |
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|RSCAT |1.0.0 |1 | | |
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|rstanarm |2.18.2 |1 | |2 |
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|[rstap](failures.md#rstap) |1.0.3 |__+1__ | |-3 |
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|rsvg |1.3 |1 | | |
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|RtutoR |1.2 |1 | | |
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|SeqFeatR |0.3.1 |1 | | |
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|simmr |0.3 |1 | | |
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|sitmo |2.0.1 |1 | | |
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|SMITE |? | | | |
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|SNPhood |1.12.0 |1 | |3 |
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|spcosa |0.3-8 |1 | | |
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|StarBioTrek |1.8.5 |1 | | |
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|TCGAbiolinks |2.10.5 |1 | |1 |
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|TCseq |1.6.1 |1 | | |
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|TeachingDemos |2.10 |1 | |1 |
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|TVTB |1.8.0 |1 | |1 |
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|vortexR |1.1.6 |1 | | |
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|XBSeq |1.14.1 |1 | |2 |
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|XLConnect |0.2-15 |1 | | |
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|zooaRchGUI |1.0.2 |1 | | |
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## Broken (36)
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## New problems (18)
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|package |version |error |warning |note |source |
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|:--------------------------|:-------|:-----|:-------|:----|:-------------------------------------------------------------------------------------|
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|AneuFinder |1.10.2 | | | |[cran/AneuFinder](https://github.com/cran/AneuFinder) |
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|BaalChIP |1.8.0 | | | |[cran/BaalChIP](https://github.com/cran/BaalChIP) |
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|Bclim |3.1.2 | | | |[cran/Bclim](https://github.com/cran/Bclim) |
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|CATALYST |1.6.7 | | | |[cran/CATALYST](https://github.com/cran/CATALYST) |
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|cellHTS2 |2.46.1 | | | |[cran/cellHTS2](https://github.com/cran/cellHTS2) |
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|ChIPexoQual |1.6.0 | | | |[cran/ChIPexoQual](https://github.com/cran/ChIPexoQual) |
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|chromstaR |1.8.1 | | | |[cran/chromstaR](https://github.com/cran/chromstaR) |
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|ClassifyR |2.2.6 | | | |[cran/ClassifyR](https://github.com/cran/ClassifyR) |
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|clusternomics |0.1.1 | | | |[cran/clusternomics](https://github.com/cran/clusternomics) |
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|CNPBayes |1.12.0 | | | |[cran/CNPBayes](https://github.com/cran/CNPBayes) |
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|DeepBlueR |1.8.0 | | | |[cran/DeepBlueR](https://github.com/cran/DeepBlueR) |
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|DiffBind |2.10.0 | | | |[cran/DiffBind](https://github.com/cran/DiffBind) |
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|dmrseq |1.2.5 | | | |[cran/dmrseq](https://github.com/cran/dmrseq) |
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|FindMyFriends |1.12.0 | | | |[cran/FindMyFriends](https://github.com/cran/FindMyFriends) |
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|GOTHiC |1.18.1 | | | |[cran/GOTHiC](https://github.com/cran/GOTHiC) |
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|HTSSIP |1.4.0 | | | |[cran/HTSSIP](https://github.com/cran/HTSSIP) |
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|IHWpaper |1.10.0 | | | |[cran/IHWpaper](https://github.com/cran/IHWpaper) |
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|lime |0.4.1 | | | |[cran/lime](https://github.com/cran/lime) |
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|MSnbase |2.8.3 | | | |[cran/MSnbase](https://github.com/cran/MSnbase) |
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|msPurity |1.8.1 | | | |[cran/msPurity](https://github.com/cran/msPurity) |
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|onemap |2.1.1 | | | |[cran/onemap](https://github.com/cran/onemap) |
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|phylosim |3.0.2 | | | |[cran/phylosim](https://github.com/cran/phylosim) |
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|pmc |1.0.3 | | | |[cran/pmc](https://github.com/cran/pmc) |
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|pRoloc |1.22.2 | | | |[cran/pRoloc](https://github.com/cran/pRoloc) |
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|PureCN |1.12.2 | | | |[cran/PureCN](https://github.com/cran/PureCN) |
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|RcmdrPlugin.FuzzyClust |1.1 | | | |[cran/RcmdrPlugin.FuzzyClust](https://github.com/cran/RcmdrPlugin.FuzzyClust) |
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|scruff |1.0.2 | | | |[cran/scruff](https://github.com/cran/scruff) |
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|sdmpredictors |0.2.8 | | | |[cran/sdmpredictors](https://github.com/cran/sdmpredictors) |
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|simulator |0.2.0 | | | |[cran/simulator](https://github.com/cran/simulator) |
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|Single.mTEC.Transcriptomes |1.10.0 | | | |[cran/Single.mTEC.Transcriptomes](https://github.com/cran/Single.mTEC.Transcriptomes) |
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|SNPhood |1.12.0 | | | |[cran/SNPhood](https://github.com/cran/SNPhood) |
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|TeachingDemos |2.10 | | | |[cran/TeachingDemos](https://github.com/cran/TeachingDemos) |
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|TPP |3.10.1 | | | |[cran/TPP](https://github.com/cran/TPP) |
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|transcriptogramer |1.4.1 | | | |[cran/transcriptogramer](https://github.com/cran/transcriptogramer) |
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|variancePartition |1.12.3 | | | |[cran/variancePartition](https://github.com/cran/variancePartition) |
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|XBSeq |1.14.1 | | | |[cran/XBSeq](https://github.com/cran/XBSeq) |
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|package |version |error |warning |note |
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|:--------------------------------------------|:-------|:-----------|:-------|:--------|
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|[bayesAB](problems.md#bayesab) |1.1.1 |__+1__ | | |
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|[bayesdfa](problems.md#bayesdfa) |0.1.3 |-1 | |__+2__ |
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|[breathteststan](problems.md#breathteststan) |0.4.7 |__+1__ | |2 |
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|[CSTools](problems.md#cstools) |1.0.0 |__+1__ | | |
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|[esmisc](problems.md#esmisc) |0.0.3 |__+1__ | | |
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|[fergm](problems.md#fergm) |1.1.4 |__+1__ | | |
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|[flowAI](problems.md#flowai) |1.12.7 | | |__+1__ |
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|[ggformula](problems.md#ggformula) |0.9.1 | | |1 __+1__ |
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|[ggstatsplot](problems.md#ggstatsplot) |0.0.10 |__+1__ | | |
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|[HistDAWass](problems.md#histdawass) |1.0.1 |__+1__ | | |
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|[hybridModels](problems.md#hybridmodels) |0.3.5 |__+1__ | | |
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|[MTLR](problems.md#mtlr) |0.2.0 |__+1__ | | |
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|[PepsNMR](problems.md#pepsnmr) |1.0.2 |__+1__ | | |
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|[Roleswitch](problems.md#roleswitch) |1.20.0 |1 -1 __+1__ | |2 |
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|[trialr](problems.md#trialr) |0.1.0 |-1 | |__+3__ |
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|[vdiffr](problems.md#vdiffr) |0.3.0 |__+1__ | |1 |
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|[vidger](problems.md#vidger) |1.2.1 |__+1__ | |1 |
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|[xpose](problems.md#xpose) |0.4.4 |__+2__ | | |
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