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feat: cache start system and solver in HomotopyContinuation interface #3192

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Merged
merged 4 commits into from
Nov 10, 2024

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AayushSabharwal
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Checklist

  • Appropriate tests were added
  • Any code changes were done in a way that does not break public API
  • All documentation related to code changes were updated
  • The new code follows the
    contributor guidelines, in particular the SciML Style Guide and
    COLPRAC.
  • Any new documentation only uses public API

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@AayushSabharwal AayushSabharwal marked this pull request as draft November 8, 2024 12:00
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I realized polynomial checking doesn't take into account observed variables, so we don't report a nice error.

Comment on lines 66 to 67
@parameters n::Integer = 4
@mtkbuild sys = NonlinearSystem([x^n + x^2 - 1 ~ 0])
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@isaacsas isaacsas Nov 8, 2024

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Not supporting integer parameter exponents is a pretty big limitation. It means that very common expressions in bio/pharma modeling, Hill expressions, would not be usable here (i.e. terms like x^n / (K + x^n) where n is an integer parameter). Is there no way to handle them? They should, ultimately, reduce down to polynomials once the denominators are removed and the integer exponent values are substituted in.

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Interesting. We can't cache the start system with parametric exponents. @ChrisRackauckas I guess we just have to do the caching optionally?

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Why can't the hill functions in this case use @constant?

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@AayushSabharwal AayushSabharwal Nov 8, 2024

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It's also worth noting that pure HomotopyContinuation.jl doesn't allow parametric exponents either.

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Parametric exponents are re-allowed with a warning

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Great, thanks.

@AayushSabharwal AayushSabharwal marked this pull request as ready for review November 9, 2024 18:17
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Extension test failures are BifurcationKit failing to precompile

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But this would be in extension tests. Just flip the order so we can see it pass.

@ChrisRackauckas ChrisRackauckas merged commit b52bce7 into SciML:master Nov 10, 2024
31 of 39 checks passed
@AayushSabharwal AayushSabharwal deleted the as/hc-cache-startsys branch November 11, 2024 03:33
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3 participants