Search results

Error: snap-aligner output multiple alignments

Status: Open.

#170 In amplab/snap;

· yi1873 opened on Apr 17, 2025

Extend Alt contigs option to allow mapping to two haplotypes genomes.

Status: Open.

#169 In amplab/snap;

· ghuls opened on Dec 12, 2023

Feature request: name sort output

Status: Open.

#166 In amplab/snap;

· matthdsm opened on Apr 5, 2023

mapping HiC read

Status: Open.

#165 In amplab/snap;

· yangfangyuan0102 opened on Feb 25, 2023

bug (?): unexpected results with enforced interval size greater than default

Status: Open.

#162 In amplab/snap;

· eboyden opened on Oct 15, 2022

feature request: print LB/PL/PU/SM tags only in @RG header line

Status: Open.

#159 In amplab/snap;

· eboyden opened on Oct 3, 2022

Feature request: markduplicate metrics and settings

Status: Open.

#158 In amplab/snap;

· matthdsm opened on Aug 25, 2022

Indel calling

Status: Open.

#154 In amplab/snap;

· kokyriakidis opened on May 31, 2022

feature request: option to mark optical duplicates only

Status: Open.

#147 In amplab/snap;

· eboyden opened on Jan 6, 2022

Duplicate marking produces malformed QS tags in SAM output

Status: Open.

#145 In amplab/snap;

· eboyden opened on Jan 6, 2022

better handling of complex indel situations

Status: Open.

#143 In amplab/snap;

· bwlang opened on Dec 27, 2021

Original fastq order

Status: Open.

#127 In amplab/snap;

· jkbonfield opened on Nov 11, 2020