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@epiverse-trace

Epiverse-TRACE

README.md

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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 42 4

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 34 12

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 20 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 16 4

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 14 4

  6. epiCo epiCo Public

    R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

    R 11 2

Repositories

Showing 10 of 61 repositories
  • etdashboard Public

    Developer dashboard for a universe overview of Epiverse-TRACE packages

    epiverse-trace/etdashboard’s past year of commit activity
    R 2 0 0 0 Updated Apr 28, 2025
  • epidemics Public

    A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

    epiverse-trace/epidemics’s past year of commit activity
    R 9 5 20 (1 issue needs help) 5 Updated Apr 25, 2025
  • .github Public
    epiverse-trace/.github’s past year of commit activity
    1 MIT 1 5 0 Updated Apr 25, 2025
  • translation-epitkit Public
    epiverse-trace/translation-epitkit’s past year of commit activity
    HTML 0 CC-BY-4.0 0 0 0 Updated Apr 24, 2025
  • cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    epiverse-trace/cfr’s past year of commit activity
    R 14 4 12 5 Updated Apr 24, 2025
  • tutorials-middle Public

    Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.

    epiverse-trace/tutorials-middle’s past year of commit activity
    R 4 2 70 (3 issues need help) 6 Updated Apr 24, 2025
  • epiverse-trace.github.io Public

    Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

    epiverse-trace/epiverse-trace.github.io’s past year of commit activity
    R 2 3 8 (1 issue needs help) 4 Updated Apr 24, 2025
  • howto Public
    epiverse-trace/howto’s past year of commit activity
    R 4 CC-BY-4.0 2 67 (1 issue needs help) 5 Updated Apr 24, 2025
  • research-compendium Public
    epiverse-trace/research-compendium’s past year of commit activity
    R 1 0 19 1 Updated Apr 24, 2025
  • linelist Public

    R package for handling linelist data

    epiverse-trace/linelist’s past year of commit activity
    R 8 4 7 (1 issue needs help) 2 Updated Apr 23, 2025
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