Skip to content

Added nucleotide-count exercise. #45

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 2 commits into from
Oct 5, 2016
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 2 additions & 1 deletion config.json
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,8 @@
"robot-name",
"rna-transcription",
"atbash-cipher",
"raindrops"
"raindrops",
"nucleotide-count"
],
"deprecated": [

Expand Down
19 changes: 19 additions & 0 deletions exercises/nucleotide-count/example.el
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
;;; nucleotide-count.el --- nucleotide-count Exercise (exercism)

;;; Commentary:

;;; Code:


(defun nucleotide-count (sequence)
(let ((counts (copy-alist '((?A . 0) (?C . 0) (?G . 0) (?T . 0)))))
(dolist (i (append sequence nil))
(let ((n (assoc i counts)))
(if n
(setcdr n (1+ (cdr n)))
(error "Invalid nucleotide '%c'" i))))
counts))


(provide 'nucleotide-count)
;;; nucleotide-count.el ends here
34 changes: 34 additions & 0 deletions exercises/nucleotide-count/nucleotide-count-test.el
Original file line number Diff line number Diff line change
@@ -0,0 +1,34 @@
;;; nucleotide-count-test.el --- Tests for nucleotide-count (exercism)

;;; Commentary:

;;; Code:

(load-file "nucleotide-count.el")


(defun sort-pairs (lst fn)
(sort lst (lambda (a b) (funcall fn (car a) (car b)))))


(ert-deftest empty-dna-strand-has-no-nucleotides-test ()
(should (equal (sort-pairs (nucleotide-count "") #'<)
'((?A . 0) (?C . 0) (?G . 0) (?T . 0)))))


(ert-deftest repetitive-sequence-has-only-guanine-test ()
(should (equal (sort-pairs (nucleotide-count "GGGGGGGG") #'<)
'((?A . 0) (?C . 0) (?G . 8) (?T . 0)))))


(ert-deftest count-all-nucleotides-test ()
(should (equal (sort-pairs (nucleotide-count "AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC") #'<)
'((?A . 20) (?C . 12) (?G . 17) (?T . 21)))))


(ert-deftest invalid-nucleotide-test ()
(should-error (nucleotide-count "AGGTCCXGA")))


(provide 'nucleotide-count)
;;; nucleotide-count-test.el ends here
9 changes: 9 additions & 0 deletions exercises/nucleotide-count/nucleotide-count.el
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
;;; nucleotide-count.el --- nucleotide-count Exercise (exercism)

;;; Commentary:

;;; Code:


(provide 'nucleotide-count)
;;; nucleotide-count.el ends here