chore(deps): update all dependencies #2209

renovate-bot · 2025-05-31T17:18:53Z

This PR contains the following updates:

Package	Change	Age	Adoption	Passing	Confidence
geopandas	`==1.0.1` -> `==1.1.0`
google-api-core	`==2.24.2` -> `==2.25.0`
grpcio (source)	`==1.71.0` -> `==1.72.1`
ipython	`==9.2.0` -> `==9.3.0`
pytest (changelog)	`==8.3.5` -> `==8.4.0`
typing-extensions (changelog)	`==4.13.2` -> `==4.14.0`

Release Notes

geopandas/geopandas (geopandas)

`v1.1.0`

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Notes on dependencies:

GeoPandas 1.1 now requires Python 3.10 or greater and pandas 2.0, numpy 1.24, pyproj 3.5,
are now the minimum required version for these dependencies.
Furthermore, the minimum tested version for optional dependencies has been updated to
fiona 1.8.21, scipy 1.9, matplotlib 3.7, mapclassify 2.5, folium 0.12 and
SQLAlchemy 2.0. Older versions of these libraries may continue to work, but are no longer
considered supported (#3371).

New features and improvements:

Added options to return the result of SpatialIndex.query in a form of a dense or a
sparse boolean array. This adds optional dependency on scipy for the sparse output.
Note that this also changes the previously undocumented behaviour of the output_format
keyword (#1674).
Add grid_size parameter to union_all and dissolve (#3445).
GeoDataFrame.plot now supports pd.Index as an input for the column keyword (#3463).
Added disjoint_subset union algorithm for union_all and dissolve (#3534).
Added constrained_delaunay_triangles method to GeoSeries/GeoDataFrame (#3552).
Added to_pandas_kwargs argument to from_arrow, read_parquet and read_feather
to allow better control of conversion of non-geometric Arrow data to DataFrames (#3466).
Added is_valid_coverage and invalid_coverage_edges to GeoSeries/GeoDataFrame to
allow validation of polygonal coverage (#3545).
Added maximum_inscribed_circle method from shapely to GeoSeries/GeoDataFrame (#3544).
Added minimum_clearance_line method from shapely to GeoSeries/GeoDataFrame (#3543).
Added orient_polygons method from shapely to GeoSeries/GeoDataFrame (#3559).
Added method and keep_collapsed argument to make_valid (#3548).
Added simplify_coverage method for topological simplification of polygonal coverages
to GeoSeries/GeoDataFrame (#3541).
Added initial support of M coordinates (m and has_m properties, include_m in get_coordinates) (#3561).
Added geom_equals_identical method exposing equals_identical from shapely to GeoSeries/GeoDataFrame (#3560).
GeoPandas now attempts to use a range request when reading from an URL even if the header
does not directly indicate its support (#3572).
Added geopandas.accessors module. Import this module to register a
pandas.Series.geo accessor, which exposes GeoSeries methods via pandas's
extension mechanism (#3272).
Improve performance of overlay with how=identity (#3504).
A warning message is raised in read_file when a GeoDataFrame or GeoSeries mask
and/or the source dataset is missing a defined CRS. (#3464)
GeoDataFrame no longer hard-codes the class internally, allowing easier subclassing (#3505).

Bug fixes:

Fix an issue that showed numpy dtypes in bbox in to_geo_dict and __geo_interface__. (#3436)
Fix an issue in sample_points that could occasionally result in non-uniform distribution (#3470).
Fix unspecified layer warning being emitted while reading multilayer datasets, even
when layer is specified when using the mask or bbox keywords (#3378).
Properly support named aggregations over a geometry column in GroupBy.agg (#3368).
Support GeoDataFrame constructor receiving arguments to geometry which are not
(Geo)Series, but instead should be interpreted as column names, like Enums (#3384).
Fix regression where constructing a GeoSeries from a pd.Series with GeometryDtype values
failed when crs was provided (#3383).
Fix regression where overlay with keep_geom_type returns wrong results if the
input contains invalid geometries (#3395).
Fix the dtype of the GeometryArray backing data being incorrect for zero length
GeoDataFrames causing errors in overlay (#3424).
Fix regression where constructing a GeoSeries from a pd.Series with GeometryDtype values
failed when crs was provided (#3383).
Fix plotting of polygons with holes by normalizing the coordinate order prior to plotting (#3483).
Fix an issue in plotting when polygon patches were not closed (#3576).
Fix ambiguous error when GeoDataFrame is initialised with a column called "crs" (#3502).
Avoid change of the plot aspect when plotting missing values (#3438).

Deprecations and compatibility notes:

The GeoSeries.select method wrapping the pandas Series.select method has been removed.
The upstream method no longer exists in all supported version of pandas (#3394).
The deprecated geom_almost_equals method has been removed. Use
geom_equals_exact instead (#3522).

googleapis/python-api-core (google-api-core)

`v2.25.0`

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Features

Add protobuf runtime version to x-goog-api-client header (#812) (118bd96)
Support dynamic retry backoff values (#793) (70697a3)

Bug Fixes

Resolve issue where pre-release versions of dependencies are installed (#808) (1ca7973)

grpc/grpc (grpcio)

`v1.72.1`

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This is release gRPC Core 1.72.1 (gusto).

For gRPC documentation, see grpc.io. For previous releases, see Releases.

This release contains refinements, improvements, and bug fixes, with highlights listed below.

Python

Pin Cython to 3.1.1 #39609
- This solves several issues:
  1. #39588: Selecting unstable Cython releases when building gRPC Python artifacts.
  2. Using inconsistent Cython version in released platform-specific wheels within the same grpcio release.
  3. cython/cython#6878 Several published grpcio wheels were built with Cython 3.1.0 and are affected by Cython memory leak issue when using AsyncIO APIs (grpc.aio.*).
Fix Python 3.12 MacOS universal release artifact #39418

`v1.72.0`

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This is release gRPC Core 1.72.0 (gusto).

For gRPC documentation, see grpc.io. For previous releases, see Releases.

This release contains refinements, improvements, and bug fixes.

ipython/ipython (ipython)

`v9.3.0`

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pytest-dev/pytest (pytest)

`v8.4.0`

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pytest 8.4.0 (2025-06-02)

Removals and backward incompatible breaking changes

#11372: Async tests will now fail, instead of warning+skipping, if you don't have any suitable plugin installed.
#12346: Tests will now fail, instead of raising a warning, if they return any value other than None.
#12874: We dropped support for Python 3.8 following its end of life (2024-10-07).
#12960: Test functions containing a yield now cause an explicit error. They have not been run since pytest 4.0, and were previously marked as an expected failure and deprecation warning.

See the docs <yield tests deprecated>{.interpreted-text role="ref"} for more information.

Deprecations (removal in next major release)

#10839: Requesting an asynchronous fixture without a [pytest_fixture_setup]{.title-ref} hook that resolves it will now give a DeprecationWarning. This most commonly happens if a sync test requests an async fixture. This should have no effect on a majority of users with async tests or fixtures using async pytest plugins, but may affect non-standard hook setups or autouse=True. For guidance on how to work around this warning see sync-test-async-fixture{.interpreted-text role="ref"}.

New features

#11538: Added pytest.RaisesGroup{.interpreted-text role="class"} as an equivalent to pytest.raises{.interpreted-text role="func"} for expecting ExceptionGroup{.interpreted-text role="exc"}. Also adds pytest.RaisesExc{.interpreted-text role="class"} which is now the logic behind pytest.raises{.interpreted-text role="func"} and used as parameter to pytest.RaisesGroup{.interpreted-text role="class"}. RaisesGroup includes the ability to specify multiple different expected exceptions, the structure of nested exception groups, and flags for emulating except* <except_star>{.interpreted-text role="ref"}. See assert-matching-exception-groups{.interpreted-text role="ref"} and docstrings for more information.
#12081: Added capteesys{.interpreted-text role="fixture"} to capture AND pass output to next handler set by --capture=.
#12504: pytest.mark.xfail{.interpreted-text role="func"} now accepts pytest.RaisesGroup{.interpreted-text role="class"} for the raises parameter when you expect an exception group. You can also pass a pytest.RaisesExc{.interpreted-text role="class"} if you e.g. want to make use of the check parameter.
#12713: New [--force-short-summary]{.title-ref} option to force condensed summary output regardless of verbosity level.

This lets users still see condensed summary output of failures for quick reference in log files from job outputs, being especially useful if non-condensed output is very verbose.
#12749: pytest traditionally collects classes/functions in the test module namespace even if they are imported from another file.

For example:

contents of src/domain.py

class Testament: ...

contents of tests/test_testament.py

from domain import Testament

def test_testament(): ...
```

In this scenario with the default options, pytest will collect the class [Testament]{.title-ref} from [tests/test_testament.py]{.title-ref} because it starts with [Test]{.title-ref}, even though in this case it is a production class being imported in the test module namespace.

This behavior can now be prevented by setting the new `collect_imported_tests`{.interpreted-text role="confval"} configuration option to `false`, which will make pytest collect classes/functions from test files **only** if they are defined in that file.

\-- by `FreerGit`{.interpreted-text role="user"}

#12765: Thresholds to trigger snippet truncation can now be set with truncation_limit_lines{.interpreted-text role="confval"} and truncation_limit_chars{.interpreted-text role="confval"}.

See truncation-params{.interpreted-text role="ref"} for more information.
#13125: console_output_style{.interpreted-text role="confval"} now supports times to show execution time of each test.
#13192: pytest.raises{.interpreted-text role="func"} will now raise a warning when passing an empty string to match, as this will match against any value. Use match="^$" if you want to check that an exception has no message.
#13192: pytest.raises{.interpreted-text role="func"} will now print a helpful string diff if matching fails and the match parameter has ^ and $ and is otherwise escaped.
#13192: You can now pass with pytest.raises(check=fn): <pytest.raises>{.interpreted-text role="func"}, where fn is a function which takes a raised exception and returns a boolean. The raises fails if no exception was raised (as usual), passes if an exception is raised and fn returns True (as well as match and the type matching, if specified, which are checked before), and propagates the exception if fn returns False (which likely also fails the test).
#13228: hidden-param{.interpreted-text role="ref"} can now be used in id of pytest.param{.interpreted-text role="func"} or in
ids of Metafunc.parametrize <pytest.Metafunc.parametrize>{.interpreted-text role="py:func"}.
It hides the parameter set from the test name.
#13253: New flag: --disable-plugin-autoload <disable_plugin_autoload>{.interpreted-text role="ref"} which works as an alternative to PYTEST_DISABLE_PLUGIN_AUTOLOAD{.interpreted-text role="envvar"} when setting environment variables is inconvenient; and allows setting it in config files with addopts{.interpreted-text role="confval"}.

Improvements in existing functionality

#10224: pytest's short and long traceback styles (how-to-modifying-python-tb-printing{.interpreted-text role="ref"})
now have partial 657{.interpreted-text role="pep"} support and will show specific code segments in the
traceback.

================================= FAILURES =================================
_______________________ test_gets_correct_tracebacks _______________________

test_tracebacks.py:12: in test_gets_correct_tracebacks
    assert manhattan_distance(p1, p2) == 1
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
test_tracebacks.py:6: in manhattan_distance
    return abs(point_1.x - point_2.x) + abs(point_1.y - point_2.y)
                           ^^^^^^^^^
E   AttributeError: 'NoneType' object has no attribute 'x'

-- by ammaraskar{.interpreted-text role="user"}

#11118: Now pythonpath{.interpreted-text role="confval"} configures [$PYTHONPATH]{.title-ref} earlier than before during the initialization process, which now also affects plugins loaded via the [-p]{.title-ref} command-line option.

-- by millerdev{.interpreted-text role="user"}

#11381: The type parameter of the parser.addini method now accepts ["int"]{.title-ref} and "float" parameters, facilitating the parsing of configuration values in the configuration file.

Example:

def pytest_addoption(parser):
    parser.addini("int_value", type="int", default=2, help="my int value")
    parser.addini("float_value", type="float", default=4.2, help="my float value")

The [pytest.ini]{.title-ref} file:

[pytest]
int_value = 3
float_value = 5.4

#11525: Fixtures are now clearly represented in the output as a "fixture object", not as a normal function as before, making it easy for beginners to catch mistakes such as referencing a fixture declared in the same module but not requested in the test function.

-- by the-compiler{.interpreted-text role="user"} and glyphack{.interpreted-text role="user"}
#12426: A warning is now issued when pytest.mark.usefixtures ref{.interpreted-text role="ref"} is used without specifying any fixtures. Previously, empty usefixtures markers were silently ignored.
#12707: Exception chains can be navigated when dropped into Pdb in Python 3.13+.
#12736: Added a new attribute [name]{.title-ref} with the fixed value ["pytest tests"]{.title-ref} to the root tag [testsuites]{.title-ref} of the junit-xml generated by pytest.

This attribute is part of many junit-xml specifications and is even part of the [junit-10.xsd]{.title-ref} specification that pytest's implementation is based on.
#12943: If a test fails with an exceptiongroup with a single exception, the contained exception will now be displayed in the short test summary info.
#12958: A number of unraisable <unraisable>{.interpreted-text role="ref"} enhancements:
- Set the unraisable hook as early as possible and unset it as late as possible, to collect the most possible number of unraisable exceptions.
- Call the garbage collector just before unsetting the unraisable hook, to collect any straggling exceptions.
- Collect multiple unraisable exceptions per test phase.
- Report the tracemalloc{.interpreted-text role="mod"} allocation traceback (if available).
- Avoid using a generator based hook to allow handling StopIteration{.interpreted-text role="class"} in test failures.
- Report the unraisable exception as the cause of the pytest.PytestUnraisableExceptionWarning{.interpreted-text role="class"} exception if raised.
- Compute the repr of the unraisable object in the unraisable hook so you get the latest information if available, and should help with resurrection of the object.
#13010: pytest.approx{.interpreted-text role="func"} now can compare collections that contain numbers and non-numbers mixed.
#13016: A number of threadexception <unraisable>{.interpreted-text role="ref"} enhancements:
- Set the excepthook as early as possible and unset it as late as possible, to collect the most possible number of unhandled exceptions from threads.
- Collect multiple thread exceptions per test phase.
- Report the tracemalloc{.interpreted-text role="mod"} allocation traceback (if available).
- Avoid using a generator based hook to allow handling StopIteration{.interpreted-text role="class"} in test failures.
- Report the thread exception as the cause of the pytest.PytestUnhandledThreadExceptionWarning{.interpreted-text role="class"} exception if raised.
- Extract the name of the thread object in the excepthook which should help with resurrection of the thread.
#13031: An empty parameter set as in pytest.mark.parametrize([], ids=idfunc) will no longer trigger a call to idfunc with internal objects.
#13115: Allows supplying ExceptionGroup[Exception] and BaseExceptionGroup[BaseException] to pytest.raises to keep full typing on ExceptionInfo <pytest.ExceptionInfo>{.interpreted-text role="class"}:
```
with pytest.raises(ExceptionGroup[Exception]) as exc_info:
    some_function()
```
Parametrizing with other exception types remains an error - we do not check the types of child exceptions and thus do not permit code that might look like we do.
#13122: The --stepwise mode received a number of improvements:
- It no longer forgets the last failed test in case pytest is executed later without the flag.
  
  This enables the following workflow:
  1. Execute pytest with --stepwise, pytest then stops at the first failing test;
  2. Iteratively update the code and run the test in isolation, without the --stepwise flag (for example in an IDE), until it is fixed.
  3. Execute pytest with --stepwise again and pytest will continue from the previously failed test, and if it passes, continue on to the next tests.
  Previously, at step 3, pytest would start from the beginning, forgetting the previously failed test.
  
  This change however might cause issues if the --stepwise mode is used far apart in time, as the state might get stale, so the internal state will be reset automatically in case the test suite changes (for now only the number of tests are considered for this, we might change/improve this on the future).
- New --stepwise-reset/--sw-reset flag, allowing the user to explicitly reset the stepwise state and restart the workflow from the beginning.
#13308: Added official support for Python 3.14.
#13380: Fix ExceptionGroup{.interpreted-text role="class"} traceback filtering to exclude pytest internals.
#13415: The author metadata of the BibTex example is now correctly formatted with last names following first names.
An example of BibLaTex has been added.
BibTex and BibLaTex examples now clearly indicate that what is cited is software.

-- by willynilly{.interpreted-text role="user"}
#13420: Improved test collection performance by optimizing path resolution used in FSCollector.
#13457: The error message about duplicate parametrization no longer displays an internal stack trace.
#4112: Using pytest.mark.usefixtures <pytest.mark.usefixtures ref>{.interpreted-text role="ref"} on pytest.param{.interpreted-text role="func"} now produces an error instead of silently doing nothing.
#5473: Replace [:]{.title-ref} with [;]{.title-ref} in the assertion rewrite warning message so it can be filtered using standard Python warning filters before calling pytest.main{.interpreted-text role="func"}.

[#&#8203;6985](https://redirect.github.com/pytest-dev/pytest/issues/6985): Improved `pytest.approx`{.interpreted-text role="func"} to enhance the readability of value ranges and tolerances between 0.001 and 1000.

:   -   The [repr]{.title-ref} method now provides clearer output for values within those ranges, making it easier to interpret the results.

    -   Previously, the output for those ranges of values and tolerances was displayed in scientific notation (e.g., [42 ± 1.0e+00]{.title-ref}). The updated method now presents the tolerance as a decimal for better readability (e.g., [42 ± 1]{.title-ref}).

        Example:

        **Previous Output:**

        ``` console
        >>> pytest.approx(42, abs=1)
        42 ± 1.0e+00
        ```

        **Current Output:**

        ``` console
        >>> pytest.approx(42, abs=1)
        42 ± 1
        ```

    \-- by `fazeelghafoor`{.interpreted-text role="user"}

#7683: The formerly optional pygments dependency is now required, causing output always to be source-highlighted (unless disabled via the --code-highlight=no CLI option).

Bug fixes

#10404: Apply filterwarnings from config/cli as soon as possible, and revert them as late as possible
so that warnings as errors are collected throughout the pytest run and before the
unraisable and threadexcept hooks are removed.

This allows very late warnings and unraisable/threadexcept exceptions to fail the test suite.

This also changes the warning that the lsof plugin issues from PytestWarning to the new warning PytestFDWarning so it can be more easily filtered.
#11067: The test report is now consistent regardless if the test xfailed via pytest.mark.xfail <pytest.mark.xfail ref>{.interpreted-text role="ref"} or pytest.fail{.interpreted-text role="func"}.

Previously, xfailed tests via the marker would have the string "reason: " prefixed to the message, while those xfailed via the function did not. The prefix has been removed.
#12008: In 11220{.interpreted-text role="pr"}, an unintended change in reordering was introduced by changing the way indices were assigned to direct params. More specifically, before that change, the indices of direct params to metafunc's callspecs were assigned after all parametrizations took place. Now, that change is reverted.
#12863: Fix applying markers, including pytest.mark.parametrize <pytest.mark.parametrize ref>{.interpreted-text role="ref"} when placed above [@staticmethod]{.title-ref} or [@classmethod]{.title-ref}.
#12929: Handle StopIteration from test cases, setup and teardown correctly.
#12938: Fixed --durations-min argument not respected if -vv is used.
#12946: Fixed missing help for pdb{.interpreted-text role="mod"} commands wrapped by pytest -- by adamchainz{.interpreted-text role="user"}.
#12981: Prevent exceptions in pytest.Config.add_cleanup{.interpreted-text role="func"} callbacks preventing further cleanups.
#13047: Restore pytest.approx{.interpreted-text role="func"} handling of equality checks between [bool]{.title-ref} and [numpy.bool_]{.title-ref} types.

Comparing [bool]{.title-ref} and [numpy.bool_]{.title-ref} using pytest.approx{.interpreted-text role="func"} accidentally changed in version [8.3.4]{.title-ref} and [8.3.5]{.title-ref} to no longer match:
```
>>> import numpy as np
>>> from pytest import approx
>>> [np.True_, np.True_] == pytest.approx([True, True])
False
```
This has now been fixed:
```
>>> [np.True_, np.True_] == pytest.approx([True, True])
True
```
#13119: Improved handling of invalid regex patterns for filter warnings by providing a clear error message.
#13175: The diff is now also highlighted correctly when comparing two strings.
#13248: Fixed an issue where passing a scope in Metafunc.parametrize <pytest.Metafunc.parametrize>{.interpreted-text role="py:func"} with indirect=True
could result in other fixtures being unable to depend on the parametrized fixture.
#13291: Fixed repr of attrs objects in assertion failure messages when using attrs>=25.2.
#13312: Fixed a possible KeyError crash on PyPy during collection of tests involving higher-scoped parameters.
#13345: Fix type hints for pytest.TestReport.when{.interpreted-text role="attr"} and pytest.TestReport.location{.interpreted-text role="attr"}.
#13377: Fixed handling of test methods with positional-only parameter syntax.

Now, methods are supported that formally define self as positional-only
and/or fixture parameters as keyword-only, e.g.:
```
class TestClass:

    def test_method(self, /, *, fixture): ...
```
Before, this caused an internal error in pytest.
#13384: Fixed an issue where pytest could report negative durations.
#13420: Added lru_cache to nodes._check_initialpaths_for_relpath.
#9037: Honor disable_test_id_escaping_and_forfeit_all_rights_to_community_support{.interpreted-text role="confval"} when escaping ids in parametrized tests.

Improved documentation

#12535: [This
example]{.title-ref}<https://docs.pytest.org/en/latest/example/simple.html#making-test-result-information-available-in-fixtures>
showed print statements that do not exactly reflect what the
different branches actually do. The fix makes the example more precise.
#13218: Pointed out in the pytest.approx{.interpreted-text role="func"} documentation that it considers booleans unequal to numeric zero or one.
#13221: Improved grouping of CLI options in the --help output.
#6649: Added ~pytest.TerminalReporter{.interpreted-text role="class"} to the api-reference{.interpreted-text role="ref"} documentation page.
#8612: Add a recipe for handling abstract test classes in the documentation.

A new example has been added to the documentation to demonstrate how to use a mixin class to handle abstract
test classes without manually setting the __test__ attribute for subclasses.
This ensures that subclasses of abstract test classes are automatically collected by pytest.

Packaging updates and notes for downstreams

#13317: Specified minimum allowed versions of colorama, iniconfig,
and packaging; and bumped the minimum allowed version
of exceptiongroup for python_version<'3.11' from a release
candidate to a full release.

Contributor-facing changes

#12017: Mixed internal improvements:
- Migrate formatting to f-strings in some tests.
- Use type-safe constructs in JUnitXML tests.
- MovedMockTiming into _pytest.timing.
-- by RonnyPfannschmidt{.interpreted-text role="user"}
#12647: Fixed running the test suite with the hypothesis pytest plugin.

Miscellaneous internal changes

#6649: Added ~pytest.TerminalReporter{.interpreted-text role="class"} to the public pytest API, as it is part of the signature of the pytest_terminal_summary{.interpreted-text role="hook"} hook.

python/typing_extensions (typing-extensions)

`v4.14.0`

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Changes since 4.14.0rc1:

Remove __or__ and __ror__ methods from typing_extensions.Sentinel
on Python versions <3.10. PEP 604 was introduced in Python 3.10, and
typing_extensions does not generally attempt to backport PEP-604 methods
to prior versions.
Further update typing_extensions.evaluate_forward_ref with changes in Python 3.14.

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forking-renovate · 2025-06-04T21:43:18Z

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chalmerlowe

LGTM

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chore(deps): update all dependencies

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pin geopandas===1.0.1 for python <= 3.9

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Linchin merged commit 0378caa into googleapis:main Jun 4, 2025
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chore(deps): update all dependencies #2209

chore(deps): update all dependencies #2209

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chore(deps): update all dependencies #2209

chore(deps): update all dependencies #2209

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Release Notes

v1.1.0

v2.25.0

Features

Bug Fixes

v1.72.1

Python

v1.72.0

v9.3.0

v8.4.0

pytest 8.4.0 (2025-06-02)

Removals and backward incompatible breaking changes

Deprecations (removal in next major release)

New features

contents of src/domain.py

contents of tests/test_testament.py

Improvements in existing functionality

Bug fixes

Improved documentation

Packaging updates and notes for downstreams

Contributor-facing changes

Miscellaneous internal changes

v4.14.0

Configuration

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renovate-bot commented May 31, 2025 •

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`v1.1.0`

`v2.25.0`

`v1.72.1`

`v1.72.0`

`v9.3.0`

`v8.4.0`

`v4.14.0`