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Updating all installation guides  #1989

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@djarecka

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@djarecka

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I've recently tested a few options for a standard nipype installation from nipype website and the Beginner Guide and for Ubuntu none of them was working without problems (some library are missing, some tests give error or fail).
IMO, it is also not clear which instruction the new user should follow.

I know that with the new nipype that will change, but just to remember to check all options for a few OS and to unify/simplify various instructions.

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