Skip to content

[ENH] Interface for tcksift2 #3666

Open
@GalKepler

Description

@GalKepler

Summary

It should be beneficial to have an interface for MRTrix's tcksift2 as part of the overall effort to include as many as possible of the tools being used in the neuroimaging society.

Expected behavior

Being able to use a dedicated interface for tcksift2, that would, at it's most simplified case, look like this:

from nipype.interfaces import mrtrix3 as mrt
tcksift2 = mrt.TckSift2()
tcksift2.inputs.in_file = "/path/to/streamlines.tck"
tcksift2.inputs.in_fod = "/path/to/fod.mif"
tcksift2.inputs.out_weights = "/path/to/streamlines_weights.txt"

tcksift2.cmdline
tcksift2 /path/to/streamlines.tck /path/to/fod.mif /path/to/streamlines_weights.txt

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions