Tooling: Confusing difference in behavior between `pre-commit run --all-files` and `tox -e run lint`

[Sachaa-Thanasius]

I've noticed that if I run tox run -e lint in a clone of this project, black will do a few cosmetic changes related to whitespace and overload ellipses, while invoking pre-commit run --all-files will remove those changes. I thought tox's lint testenv was supposed to be run before trying to commit, so it was surprising to see that I should actually avoid using in order to prevent diffs that are going to get cancelled out anyway by pre-commit's black run.

Would you agree that this is potentially confusing for new contributors (e.g. me) trying to configure their environment? If so, a few potential fixes come to mind:

• Merging [pre-commit.ci] pre-commit autoupdate #115, so that the version of black that pre-commit is using stays up to date with the one tox is using.
• Pinning black within the tox lint testenv so that it's the same version as the pre-commit one.
• Removing the lint testenv entirely and just implying tox -e run pre-commit or pre-commit run is what potential contributors should use.

I don't know your exact workflow, whether pinning black in pre-commit and in tox is potentially problematic, etc., so I don't know what's best; just pointing it out so maybe it can be simplified to one command for running linting/testing tools, slightly easing the contribution process.

Attached below is the output from both commands to demonstrate the behavior, using pre-commit 3.7.1 and tox 4.15.1:

PS C:\Users\name\Projects\personal\rfc3986> tox run -e lint
lint: commands[0]> black -l 79 -t py37 src/rfc3986 tests/
reformatted C:\Users\name\Projects\personal\rfc3986\src\rfc3986\compat.py
reformatted C:\Users\name\Projects\personal\rfc3986\src\rfc3986\exceptions.py
reformatted C:\Users\name\Projects\personal\rfc3986\src\rfc3986\uri.py
reformatted C:\Users\name\Projects\personal\rfc3986\src\rfc3986\iri.py
reformatted C:\Users\name\Projects\personal\rfc3986\src\rfc3986\_mixin.py
reformatted C:\Users\name\Projects\personal\rfc3986\tests\test_validators.py

All done! ✨ 🍰 ✨
6 files reformatted, 20 files left unchanged.
lint: commands[1]> flake8 src/rfc3986
src/rfc3986\parseresult.py:16:1: I100 Import statements are in the wrong order. 'from collections import namedtuple' should be before 'import typing'
lint: exit 1 (1.95 seconds) C:\Users\name\Projects\personal\rfc3986> flake8 src/rfc3986 pid=44572
  lint: FAIL code 1 (2.91=setup[0.08]+cmd[0.88,1.95] seconds)
  evaluation failed :( (3.09 seconds)
PS C:\Users\name\Projects\personal\rfc3986> git diff
diff --git a/src/rfc3986/_mixin.py b/src/rfc3986/_mixin.py
index f55d13f..4686a65 100644
--- a/src/rfc3986/_mixin.py
+++ b/src/rfc3986/_mixin.py
@@ -1,4 +1,5 @@
 """Module containing the implementation of the URIMixin class."""
+
 import warnings

 from . import exceptions as exc
diff --git a/src/rfc3986/compat.py b/src/rfc3986/compat.py
index d509d64..acddfb9 100644
--- a/src/rfc3986/compat.py
+++ b/src/rfc3986/compat.py
@@ -24,8 +24,7 @@ __all__ = (
 def to_str(  # noqa: D103
     b: t.Union[str, bytes, bytearray],
     encoding: str = "utf-8",
-) -> str:
-    ...
+) -> str: ...


 @t.overload
@@ -47,8 +46,7 @@ def to_str(
 def to_bytes(  # noqa: D103
     s: t.Union[str, bytes, bytearray],
     encoding: str = "utf-8",
-) -> bytes:
-    ...
+) -> bytes: ...


 @t.overload
diff --git a/src/rfc3986/exceptions.py b/src/rfc3986/exceptions.py
PS C:\Users\name\Projects\personal\rfc3986> git diff
diff --git a/src/rfc3986/_mixin.py b/src/rfc3986/_mixin.py
index f55d13f..4686a65 100644
--- a/src/rfc3986/_mixin.py
+++ b/src/rfc3986/_mixin.py
@@ -1,4 +1,5 @@
 """Module containing the implementation of the URIMixin class."""
+
 import warnings

 from . import exceptions as exc
diff --git a/src/rfc3986/compat.py b/src/rfc3986/compat.py
index d509d64..acddfb9 100644
--- a/src/rfc3986/compat.py
+++ b/src/rfc3986/compat.py
@@ -24,8 +24,7 @@ __all__ = (
 def to_str(  # noqa: D103
     b: t.Union[str, bytes, bytearray],
     encoding: str = "utf-8",
-) -> str:
-    ...
+) -> str: ...


 @t.overload
@@ -47,8 +46,7 @@ def to_str(
 def to_bytes(  # noqa: D103
     s: t.Union[str, bytes, bytearray],
     encoding: str = "utf-8",
-) -> bytes:
-    ...
+) -> bytes: ...


 @t.overload
diff --git a/src/rfc3986/exceptions.py b/src/rfc3986/exceptions.py
index d513ddc..45c9c8f 100644
--- a/src/rfc3986/exceptions.py
+++ b/src/rfc3986/exceptions.py
@@ -1,4 +1,5 @@
 """Exceptions module for rfc3986."""
+
 from . import compat


diff --git a/src/rfc3986/iri.py b/src/rfc3986/iri.py
index 6578bc0..a275b81 100644
--- a/src/rfc3986/iri.py
+++ b/src/rfc3986/iri.py
@@ -1,4 +1,5 @@
 """Module containing the implementation of the IRIReference class."""
+
 # Copyright (c) 2014 Rackspace
 # Copyright (c) 2015 Ian Stapleton Cordasco
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/src/rfc3986/uri.py b/src/rfc3986/uri.py
index 6747447..29a9f54 100644
--- a/src/rfc3986/uri.py
+++ b/src/rfc3986/uri.py
@@ -1,4 +1,5 @@
 """Module containing the implementation of the URIReference class."""
+
 # Copyright (c) 2014 Rackspace
 # Copyright (c) 2015 Ian Stapleton Cordasco
 # Licensed under the Apache License, Version 2.0 (the "License");
diff --git a/tests/test_validators.py b/tests/test_validators.py
index 0ec7449..2bab3a1 100644
--- a/tests/test_validators.py
+++ b/tests/test_validators.py
@@ -1,4 +1,5 @@
 """Tests for the validators module."""
+
 import pytest

 import rfc3986
PS C:\Users\name\Projects\personal\rfc3986> pre-commit run --all-files
check yaml...............................................................Passed
debug statements (python)................................................Passed
fix end of files.........................................................Passed
trim trailing whitespace.................................................Passed
Reorder python imports...................................................Failed
- hook id: reorder-python-imports
- exit code: 1
- files were modified by this hook

Reordering imports in src/rfc3986/exceptions.py
Reordering imports in tests/test_validators.py
Reordering imports in src/rfc3986/uri.py
Reordering imports in src/rfc3986/_mixin.py
Reordering imports in src/rfc3986/iri.py

black....................................................................Failed
- hook id: black
- files were modified by this hook

reformatted src\rfc3986\compat.py

All done! \u2728 \U0001f370 \u2728
1 file reformatted, 27 files left unchanged.

pyupgrade................................................................Passed
flake8...................................................................Failed
- hook id: flake8
- exit code: 1

src/rfc3986/parseresult.py:16:1: I100 Import statements are in the wrong order. 'from collections import namedtuple' should be before 'import typing'

setup-cfg-fmt............................................................Passed
PS C:\Users\name\Projects\personal\rfc3986> git diff
PS C:\Users\name\Projects\personal\rfc3986>