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Dec 19, 2023
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cc7c92c
add initial file
measty Nov 6, 2023
8d72f53
add test tutorial
measty Nov 6, 2023
4ccc347
rename tutorial
measty Nov 6, 2023
9cb67a3
add notebook
measty Nov 8, 2023
ee5b06d
just test
behnazelhaminia Nov 8, 2023
1957976
just test
behnazelhaminia Nov 8, 2023
9a13917
just test
behnazelhaminia Nov 9, 2023
babbdee
just test
behnazelhaminia Nov 9, 2023
7f1bc00
just test
behnazelhaminia Nov 9, 2023
a40c124
just test
behnazelhaminia Nov 9, 2023
b005f68
just test2
behnazelhaminia Nov 9, 2023
9115726
just test3
behnazelhaminia Nov 9, 2023
88b0734
add feature extraction
measty Nov 9, 2023
2348681
🚧 Change tutorial name
Nov 10, 2023
c4a97dd
📝 Update introduction section
Nov 10, 2023
e1dee7c
Merge pull request #4 from measty/add-intro
measty Nov 10, 2023
5a6379e
update text
measty Nov 10, 2023
7cd8568
🍱 Add WSI pyramid stack image
Nov 10, 2023
5c6fe72
just test3
behnazelhaminia Nov 10, 2023
bb40637
I tried to Cut down the patch-prediction stuff and shift the focus to…
behnazelhaminia Nov 10, 2023
cac7f83
I tried to Cut down the patch-prediction stuff and shift the focus to…
behnazelhaminia Nov 10, 2023
8579f89
Focus towards using PyTorch
behnazelhaminia Nov 10, 2023
7e0ca7e
update
measty Nov 10, 2023
ebe3947
Removed sections related to image tile
behnazelhaminia Nov 10, 2023
3bdb5dc
clear outputs
measty Nov 10, 2023
1ab408d
remove output
measty Nov 10, 2023
80f92ca
merge all changes
measty Nov 10, 2023
8b21e4b
Merge pull request #5 from measty/add-intro
measty Nov 10, 2023
ff3ba4b
Merge branch 'add-tiatoolbox-tutorial' of https://github.com/measty/t…
measty Nov 10, 2023
5f0a664
update
measty Nov 11, 2023
b646297
♻️ Update tutorial installation commands
Nov 11, 2023
d90402d
♻️ Clean imports and logging
Nov 11, 2023
3b3188e
♻️ Clean imports and remove imagenet download
Nov 11, 2023
9f90c7e
📝 Add comments to label dict
Nov 11, 2023
2c3987f
🚸 Rewritten `PatchPredictor` instantiation
Nov 11, 2023
0bb590c
fix wrong text about overview resolution used
measty Nov 11, 2023
6dbd306
🐛 Fix model loading and remove patch section
Nov 11, 2023
5baae03
📝 Minor text edits
Nov 11, 2023
344e6b2
remove references to the tile image we no longer use
measty Nov 11, 2023
7aa7e49
test compile
measty Nov 11, 2023
e586e4d
📝 Address team edits and comments
Nov 12, 2023
b1be2ce
address feedback
measty Nov 12, 2023
a2ce6fd
update supress cm
measty Nov 12, 2023
9bf0ef0
⏪ Restore patch prediction and add further links
Nov 12, 2023
3a215fb
remove files for submission
measty Nov 12, 2023
82573b4
Merge branch 'main' of https://github.com/pytorch/tutorials into add-…
measty Nov 12, 2023
c1afdbe
📝 Minor edits and tweaks
Nov 12, 2023
410d64d
🍱 Update tutorial thumbnail
Nov 12, 2023
45a976c
change tiatoolbox dep to develop
measty Nov 13, 2023
5b1ff29
Merge branch 'main' of https://github.com/pytorch/tutorials into add-…
measty Nov 14, 2023
908d075
remake as rst
measty Nov 14, 2023
d8ab422
remove added reqs
measty Nov 14, 2023
b8b986b
update link
measty Nov 14, 2023
49916d4
✏️ Add to wordlist and fix typos
Nov 14, 2023
f941cd1
Merge pull request #8 from measty/rst-version
Abdol Nov 14, 2023
eefdc38
✏️ Fix more typos
Nov 14, 2023
08e8b50
Merge pull request #9 from measty/rst-version
Abdol Nov 14, 2023
c88d298
update index
measty Nov 14, 2023
610ed17
fix typo
measty Nov 14, 2023
7c0b07d
fix typo
measty Nov 14, 2023
db32280
Merge branch 'main' into add-tiatoolbox-tutorial
measty Nov 15, 2023
7979ea6
Merge branch 'main' into add-tiatoolbox-tutorial
measty Nov 15, 2023
619e377
Merge branch 'main' into add-tiatoolbox-tutorial
carljparker Dec 6, 2023
ddfc7e7
Merge branch 'main' into add-tiatoolbox-tutorial
carljparker Dec 13, 2023
8190934
add notebook to _static
measty Dec 14, 2023
f2c396c
Merge branch 'main' into add-tiatoolbox-tutorial
measty Dec 14, 2023
a52f57f
Merge branch 'main' into add-tiatoolbox-tutorial
carljparker Dec 14, 2023
5178a40
update link to where notebook will be when merged
measty Dec 15, 2023
6bbaadf
Merge branch 'add-tiatoolbox-tutorial' of https://github.com/measty/t…
measty Dec 15, 2023
4bef6e0
Merge branch 'main' into add-tiatoolbox-tutorial
carljparker Dec 19, 2023
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2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ If you have a question about a tutorial, post in https://dev-discuss.pytorch.org
You can submit the following types of issues:

* Feature request - request a new tutorial to be added. Please explain why this tutorial is needed and how it demonstrates PyTorch value.
* Bug report - report a failiure or outdated information in an existing tutorial. When submitting a bug report, please run: `python3 -m torch.utils.collect_env` to get information about your environment and add the output to the bug report.
* Bug report - report a failure or outdated information in an existing tutorial. When submitting a bug report, please run: `python3 -m torch.utils.collect_env` to get information about your environment and add the output to the bug report.

# Contributing

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1 change: 1 addition & 0 deletions _static/tiatoolbox_tutorial.ipynb

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38 changes: 38 additions & 0 deletions en-wordlist.txt
Original file line number Diff line number Diff line change
Expand Up @@ -515,3 +515,41 @@ warmstart
warmstarted
warmstarting
warmup
wsi
WSI
TIAToolbox
tiatoolbox
HistoEnc
HistoEncoder
histoencoder
ModelABC
UMAP
umap
WSIs
wsis
WSI’s
TorchVision
img
webp
OpenJpeg
OpenSlide
Pixman
MacOS
tmp
Kather
Colorectal
LYM
mucosa
STR
stroma
ADI
MUC
PatchPredictor
Cuda
mpp
Joona
Pohjonen
pre
otsu
rgb
histologically
8 changes: 8 additions & 0 deletions index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -142,6 +142,13 @@ What's new in PyTorch tutorials?
:link: intermediate/spatial_transformer_tutorial.html
:tags: Image/Video

.. customcarditem::
:header: Inference on Whole Slide Images with TIAToolbox
:card_description: Learn how to use the TIAToolbox to perform inference on whole slide images.
:image: _static/img/thumbnails/cropped/TIAToolbox-Tutorial.png
:link: intermediate/tiatoolbox_tutorial.html
:tags: Image/Video

.. customcarditem::
:header: Semi-Supervised Learning Tutorial Based on USB
:card_description: Learn how to train semi-supervised learning algorithms (on custom data) using USB and PyTorch.
Expand Down Expand Up @@ -919,6 +926,7 @@ Additional Resources
beginner/dcgan_faces_tutorial
intermediate/spatial_transformer_tutorial
beginner/vt_tutorial
intermediate/tiatoolbox_tutorial

.. toctree::
:maxdepth: 2
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