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reverse dependencies #3352

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212 changes: 149 additions & 63 deletions revdep/README.md
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# Platform

|field |value |
|:--------|:--------------------------------------------------|
|version |R Under development (unstable) (2019-03-18 r76245) |
|os |macOS High Sierra 10.13.6 |
|system |x86_64, darwin15.6.0 |
|ui |X11 |
|language |(EN) |
|collate |en_US.UTF-8 |
|ctype |en_US.UTF-8 |
|tz |America/New_York |
|date |2019-03-27 |
|field |value |
|:--------|:----------------------------|
|version |R version 3.6.0 (2019-04-26) |
|os |macOS High Sierra 10.13.6 |
|system |x86_64, darwin15.6.0 |
|ui |X11 |
|language |(EN) |
|collate |en_US.UTF-8 |
|ctype |en_US.UTF-8 |
|tz |America/New_York |
|date |2019-05-24 |

# Dependencies

|package |old |new |Δ |
|:-------|:-----|:----------|:--|
|ggplot2 |3.1.0 |3.1.0.9000 |* |
|ggplot2 |3.1.1 |3.1.1.9000 |* |

# Revdeps

## Couldn't check (9)
## Failed to check (113)

|package |version |error |warning |note |source |
|:---------------|:-------|:-----|:-------|:----|:---------------------------------------------------------------|
|annotatr |? | | | |[cran/annotatr](https://github.com/cran/annotatr) |
|ChIPseeker |? | | | |[cran/ChIPseeker](https://github.com/cran/ChIPseeker) |
|clusterProfiler |? | | | |[cran/clusterProfiler](https://github.com/cran/clusterProfiler) |
|fgsea |? | | | |[cran/fgsea](https://github.com/cran/fgsea) |
|LINC |? | | | |[cran/LINC](https://github.com/cran/LINC) |
|MEAL |? | | | |[cran/MEAL](https://github.com/cran/MEAL) |
|methylGSA |? | | | |[cran/methylGSA](https://github.com/cran/methylGSA) |
|ReactomePA |? | | | |[cran/ReactomePA](https://github.com/cran/ReactomePA) |
|SMITE |? | | | |[cran/SMITE](https://github.com/cran/SMITE) |
|package |version |error |warning |note |
|:--------------------------------|:---------|:---------|:-------|:----|
|aslib |0.1 |1 | | |
|BaalChIP |1.8.0 |1 | |2 |
|BACA |1.3 |1 | | |
|BACCT |1.0 |1 | | |
|bamdit |3.2.1 |1 | | |
|BayesRS |0.1.3 |1 | | |
|BMSC |0.2.0 |1 | | |
|BNSP |2.0.9 |1 | | |
|BPEC |1.3.0 |1 | | |
|bsam |1.1.2 |1 | | |
|BTSPAS |2014.0901 |1 | |1 |
|CaliCo |0.1.1 |1 | | |
|ChIPseeker |? | | | |
|chromstaR |1.8.1 |1 | | |
|clusterProfiler |? | | | |
|CNVrd2 |1.20.0 |1 | | |
|CollapsABEL |0.10.11 |1 | | |
|colorednoise |1.0.4 |1 | | |
|crmPack |0.2.9 |1 | | |
|Crossover |0.1-18 |1 | | |
|CTDquerier |1.2.0 |1 | |2 |
|DaMiRseq |1.6.2 |1 | | |
|Deducer |0.7-9 |1 | | |
|[DeLorean](failures.md#delorean) |1.5.0 |__+1__ | |-3 |
|DiffBind |2.10.0 |1 | |3 |
|DiversityOccupancy |1.0.6 |1 | | |
|dynfrail |0.5.2 |1 | | |
|dynr |0.1.14-9 |1 | | |
|eegc |1.8.1 |1 |1 |2 |
|EGSEA |1.10.1 |1 | | |
|esATAC |1.4.5 |1 | |2 |
|evoper |0.5.0 |1 | | |
|ewoc |0.2.0 |1 | | |
|fgsea |? | | | |
|fingerPro |1.1 |1 | | |
|fsdaR |0.4-6 |1 | | |
|G2Sd |2.1.5 |1 | | |
|GARS |1.2.0 |1 | | |
|ggbio |1.30.0 |1 | |1 |
|growthPheno |1.0-13 |1 | | |
|HPAanalyze |1.0.0 |1 | | |
|iBMQ |1.22.0 |1 | |1 |
|iCNV |1.2.1 |1 | | |
|ideal |1.6.1 |1 | |1 |
|imageData |0.1-59 |1 | | |
|imbalance |1.0.0 |1 | | |
|Imetagene |1.12.0 |1 | | |
|InSilicoVA |1.2.5 |1 | | |
|jarbes |1.7.2 |1 | | |
|joineRML |0.4.2 |1 | | |
|JointAI |0.5.1 |1 | | |
|likeLTD |6.3.0 |1 | | |
|lilikoi |0.1.0 |1 | | |
|[lime](failures.md#lime) |0.4.1 |-1 __+1__ | | |
|LINC |? | | | |
|llama |0.9.2 |1 | | |
|LLSR |0.0.2.19 |1 | | |
|matchingMarkets |1.0-1 |1 | | |
|mbgraphic |1.0.1 |1 | | |
|mcmcabn |0.1 |1 | | |
|MEAL |? | | | |
|MetaStan |0.1.0 |1 | | |
|methylGSA |? | | | |
|mleap |0.1.3 |1 | | |
|morse |3.2.2 |1 | | |
|MSnbase |2.8.3 |2 | |6 |
|mwaved |1.1.6 |1 | | |
|netSmooth |1.2.0 |1 | |1 |
|NPflow |0.13.1 |1 | | |
|oceanis |0.8.4 |1 | | |
|OpenStreetMap |0.3.3 |1 | | |
|openVA |1.0.8 |1 | | |
|petro.One |0.2.3 |1 | | |
|phase1PRMD |1.0.1 |1 | | |
|phase1RMD |1.0.8 |1 | | |
|pimeta |1.1.2 |1 | | |
|poppr |2.8.2 |1 | | |
|PortfolioEffectHFT |1.8 |1 | | |
|psygenet2r |1.14.0 |1 |1 |3 |
|qdap |2.3.2 |1 | | |
|rcellminer |2.4.0 |1 | |1 |
|RcmdrPlugin.FuzzyClust |1.1 |1 | | |
|RDAVIDWebService |1.20.0 |1 | | |
|Rdrools |1.1.1 |1 | | |
|RDS |0.8-1 |1 | | |
|ReactomePA |? | | | |
|[RITAN](failures.md#ritan) |1.6.0 |-1 __+1__ |2 |3 |
|rmcfs |1.3.0 |1 | | |
|RnBeads |2.0.1 |1 | |2 |
|robustHD |0.5.1 |1 | | |
|rpanel |1.1-4 |1 | | |
|rpf |0.62 |1 | | |
|rrepast |0.7.0 |1 | | |
|RSCAT |1.0.0 |1 | | |
|rstanarm |2.18.2 |1 | |2 |
|[rstap](failures.md#rstap) |1.0.3 |__+1__ | |-3 |
|rsvg |1.3 |1 | | |
|RtutoR |1.2 |1 | | |
|SeqFeatR |0.3.1 |1 | | |
|simmr |0.3 |1 | | |
|sitmo |2.0.1 |1 | | |
|SMITE |? | | | |
|SNPhood |1.12.0 |1 | |3 |
|spcosa |0.3-8 |1 | | |
|StarBioTrek |1.8.5 |1 | | |
|TCGAbiolinks |2.10.5 |1 | |1 |
|TCseq |1.6.1 |1 | | |
|TeachingDemos |2.10 |1 | |1 |
|TVTB |1.8.0 |1 | |1 |
|vortexR |1.1.6 |1 | | |
|XBSeq |1.14.1 |1 | |2 |
|XLConnect |0.2-15 |1 | | |
|zooaRchGUI |1.0.2 |1 | | |

## Broken (36)
## New problems (18)

|package |version |error |warning |note |source |
|:--------------------------|:-------|:-----|:-------|:----|:-------------------------------------------------------------------------------------|
|AneuFinder |1.10.2 | | | |[cran/AneuFinder](https://github.com/cran/AneuFinder) |
|BaalChIP |1.8.0 | | | |[cran/BaalChIP](https://github.com/cran/BaalChIP) |
|Bclim |3.1.2 | | | |[cran/Bclim](https://github.com/cran/Bclim) |
|CATALYST |1.6.7 | | | |[cran/CATALYST](https://github.com/cran/CATALYST) |
|cellHTS2 |2.46.1 | | | |[cran/cellHTS2](https://github.com/cran/cellHTS2) |
|ChIPexoQual |1.6.0 | | | |[cran/ChIPexoQual](https://github.com/cran/ChIPexoQual) |
|chromstaR |1.8.1 | | | |[cran/chromstaR](https://github.com/cran/chromstaR) |
|ClassifyR |2.2.6 | | | |[cran/ClassifyR](https://github.com/cran/ClassifyR) |
|clusternomics |0.1.1 | | | |[cran/clusternomics](https://github.com/cran/clusternomics) |
|CNPBayes |1.12.0 | | | |[cran/CNPBayes](https://github.com/cran/CNPBayes) |
|DeepBlueR |1.8.0 | | | |[cran/DeepBlueR](https://github.com/cran/DeepBlueR) |
|DiffBind |2.10.0 | | | |[cran/DiffBind](https://github.com/cran/DiffBind) |
|dmrseq |1.2.5 | | | |[cran/dmrseq](https://github.com/cran/dmrseq) |
|FindMyFriends |1.12.0 | | | |[cran/FindMyFriends](https://github.com/cran/FindMyFriends) |
|GOTHiC |1.18.1 | | | |[cran/GOTHiC](https://github.com/cran/GOTHiC) |
|HTSSIP |1.4.0 | | | |[cran/HTSSIP](https://github.com/cran/HTSSIP) |
|IHWpaper |1.10.0 | | | |[cran/IHWpaper](https://github.com/cran/IHWpaper) |
|lime |0.4.1 | | | |[cran/lime](https://github.com/cran/lime) |
|MSnbase |2.8.3 | | | |[cran/MSnbase](https://github.com/cran/MSnbase) |
|msPurity |1.8.1 | | | |[cran/msPurity](https://github.com/cran/msPurity) |
|onemap |2.1.1 | | | |[cran/onemap](https://github.com/cran/onemap) |
|phylosim |3.0.2 | | | |[cran/phylosim](https://github.com/cran/phylosim) |
|pmc |1.0.3 | | | |[cran/pmc](https://github.com/cran/pmc) |
|pRoloc |1.22.2 | | | |[cran/pRoloc](https://github.com/cran/pRoloc) |
|PureCN |1.12.2 | | | |[cran/PureCN](https://github.com/cran/PureCN) |
|RcmdrPlugin.FuzzyClust |1.1 | | | |[cran/RcmdrPlugin.FuzzyClust](https://github.com/cran/RcmdrPlugin.FuzzyClust) |
|scruff |1.0.2 | | | |[cran/scruff](https://github.com/cran/scruff) |
|sdmpredictors |0.2.8 | | | |[cran/sdmpredictors](https://github.com/cran/sdmpredictors) |
|simulator |0.2.0 | | | |[cran/simulator](https://github.com/cran/simulator) |
|Single.mTEC.Transcriptomes |1.10.0 | | | |[cran/Single.mTEC.Transcriptomes](https://github.com/cran/Single.mTEC.Transcriptomes) |
|SNPhood |1.12.0 | | | |[cran/SNPhood](https://github.com/cran/SNPhood) |
|TeachingDemos |2.10 | | | |[cran/TeachingDemos](https://github.com/cran/TeachingDemos) |
|TPP |3.10.1 | | | |[cran/TPP](https://github.com/cran/TPP) |
|transcriptogramer |1.4.1 | | | |[cran/transcriptogramer](https://github.com/cran/transcriptogramer) |
|variancePartition |1.12.3 | | | |[cran/variancePartition](https://github.com/cran/variancePartition) |
|XBSeq |1.14.1 | | | |[cran/XBSeq](https://github.com/cran/XBSeq) |
|package |version |error |warning |note |
|:--------------------------------------------|:-------|:-----------|:-------|:--------|
|[bayesAB](problems.md#bayesab) |1.1.1 |__+1__ | | |
|[bayesdfa](problems.md#bayesdfa) |0.1.3 |-1 | |__+2__ |
|[breathteststan](problems.md#breathteststan) |0.4.7 |__+1__ | |2 |
|[CSTools](problems.md#cstools) |1.0.0 |__+1__ | | |
|[esmisc](problems.md#esmisc) |0.0.3 |__+1__ | | |
|[fergm](problems.md#fergm) |1.1.4 |__+1__ | | |
|[flowAI](problems.md#flowai) |1.12.7 | | |__+1__ |
|[ggformula](problems.md#ggformula) |0.9.1 | | |1 __+1__ |
|[ggstatsplot](problems.md#ggstatsplot) |0.0.10 |__+1__ | | |
|[HistDAWass](problems.md#histdawass) |1.0.1 |__+1__ | | |
|[hybridModels](problems.md#hybridmodels) |0.3.5 |__+1__ | | |
|[MTLR](problems.md#mtlr) |0.2.0 |__+1__ | | |
|[PepsNMR](problems.md#pepsnmr) |1.0.2 |__+1__ | | |
|[Roleswitch](problems.md#roleswitch) |1.20.0 |1 -1 __+1__ | |2 |
|[trialr](problems.md#trialr) |0.1.0 |-1 | |__+3__ |
|[vdiffr](problems.md#vdiffr) |0.3.0 |__+1__ | |1 |
|[vidger](problems.md#vidger) |1.2.1 |__+1__ | |1 |
|[xpose](problems.md#xpose) |0.4.4 |__+2__ | | |

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