BF: ANTS LaplacianThickness cmdline opts fixed up #2846
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That interface had a chance to work only when no any optional options specified since cmdline specs. I also stripped opt_ prefix from tollerance since they are all optional
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This is a change based on a new version of ANTs? We should then set minimum/maximum versions or in some way account for version differences. |
This was referenced Jan 11, 2019
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no, I think it is for the "forever version of ANTs" which was actually never tested to work correctly via nipype. ... I even double checked by looking at 98188c3927a69c775cd1ac3f1ec6e41a0fd5a9d4 of ANTS from 2009 -- the same logic in handling the cmdline args |
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Please merge master to fix tests. |
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Feb 4, 2019
1.1.8 (January 28, 2019) * FIX: ANTS LaplacianThickness cmdline opts fixed up (nipy#2846) * FIX: Resolve LinAlgError during SVD (nipy#2838) * ENH: Add interfaces wrapping DIPY worflows (nipy#2830) * ENH: Update BIDSDataGrabber for pybids 0.7 (nipy#2737) * ENH: Add FSL `eddy_quad` interface (nipy#2825) * ENH: Support tckgen -select in MRtrix3 v3+ (nipy#2823) * ENH: Support for BIDS event files (nipy#2845) * ENH: CompositeTransformUtil, new ANTs interface (nipy#2785) * RF: Move pytest and pytest-xdist from general requirement into tests_required (nipy#2850) * DOC: Add S3DataGrabber example (nipy#2849) * DOC: Skip conftest module in API generation (nipy#2852) * DOC: Hyperlink DOIs to preferred resolver (nipy#2833) * MAINT: Install numpy!=1.16.0 from conda in Docker (nipy#2862) * MAINT: Drop pytest-xdist requirement, minimum pytest version (nipy#2856) * MAINT: Disable numpy 1.16.0 for Py2.7 (nipy#2855) * tag '1.1.8': (79 commits) MNT: Add @feilong to .zenodo, update ordering MNT: Update .mailmap MNT: Update .zenodo ordering Accept invitation as Zenodo release co-author (see nipy#2864) MAINT: Update .mailmap BF: allowing bids_event_file as alternate input MNT: Update .zenodo ordering MNT: Version 1.1.8 DOC: 1.1.8 changelog Update nipype/interfaces/dipy/tracks.py Update nipype/interfaces/dipy/reconstruction.py MNT: Install numpy!=1.16.0 from conda in Docker Add FSL auto test remake specs Update nipype/interfaces/io.py Remove return type named tuple Update nipype/info.py STY: Whitespace, line length Remove out_ prefix from EddyQuad outputs Apply minor edits from code review ...
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That interface had a chance to work only when no any optional options specified since cmdline specs.
I also stripped opt_ prefix from tollerance since they are all optional.
Some related discussions/changes on ANTs: